Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00205 ATGGTAGAAAATGCTTCGAGAACAAACCTTAGCTGCCGACGAGGTTATGACATTGAGGATGACTCCATAGATGGCATGCCATTAAAAAATGACTCTGAATGCTATGATGATGATGGCCGGGCCAAACGAACAGGAAACGTTTGGACTACAAGCTCCCACATAATAACAGCTGTGGTAGGATCTGGGGTGCTCTCCTTAGCCTGGGCAATAGCTCAGATGGGTTGGATTGCTGGTCCTGCAGTCATGCTCTTATTCAGCTTAGTCACTTTGTATACTTCATCCTTTTTAGCTGATTGTTATCGTACTGGTGACCCCTTATTCGGAAAGAGAAATTATACTTTCATGGACGCAGTTAGCAACATTCTGGGCGGGTACAGTGTTACGTTCTGTGGGATAGTTCAGTACTTGAATCTTTTCGGAAGTGCAATAGGATACACAATTGCGGCTTCCCTTAGCATGATGGCAATCAAAAGATCTAGCTGTATCCAATCCTCTGAGGGGAAAAACCCATGTCATATTTCAAGTAACCCGTACATGATCGGTTTTGGCGCAATACAAATTTTATTTTCTCAAATTCCAGATTTTCATAACATGTGGTGGCTCTCAATAGTTGCTGCAGTCATGTCTTTCGCCTATTCCTTAATTGGTCTCGCTCTTGGAATTGCCAAAATTGCAGAAACGGGAACGTTCAAGGGTAGCCTCACTGGAGTAGGTATTGGAACTGTGACAGAGGCCCAAAAAGTATGGGGCGTTTTCCAAGCTCTTGGTAACATAGCCTTCGCCTATTCATATTCTTTCGTTCTCCTTGAAATTCAGGATACCATTAAATCTCCCCCATCTGAAGTAAAAACAATGAAAAAGGCTGCAAAGTTAAGTATTGCAGTGACCACAACATTTTATATGCTTTGTGGCTGCACAGGCTATGCTGCTTTTGGAGATTCAGCACCTGGGAACCTTCTCACTGGATTTGGTTTCAGTAAACTCTATTGGCTTATAGATATTGCTAATGCTGCTATCGTAATCCACCTTGTGGGGGCATACCAAGTGTATGCCCAACCTCTCTTTGCCTTCATTGAAAAGGAGGCAGCAAGAAGATGGCCCAAAATTGACAAGGAATTCAAAATCTCAATCCCTGGTTTGCAACCGTACAATCAGAACATTTTTAACCTAGTTTGGAGGACAGTATTTGTGATCATAACCACTCTTATAGCAATGTTGCTTCCATTCTTCAATGATGTTTTGGGACTGATTGGAGCATTGGGGTTTTGGCCTTTAACTGTCTACTTTCCTGTGGAGATGTATATCTTGCAAAAGAAGATCCCAAAATGGAGTACAAGATGGATTTGTCTTGAATTGATGAGTGTGGTCTGCCTTATAGTAACAATAGTTGCTGGTCTGGGCTCAGTGGTGGGTGTCTTGCTTGATCTCAAGAAATACAAACCACTCAGTTCATACAATTAA 1461 0.4223 MVENASRTNLSCRRGYDIEDDSIDGMPLKNDSECYDDDGRAKRTGNVWTTSSHIITAVVGSGVLSLAWAIAQMGWIAGPAVMLLFSLVTLYTSSFLADCYRTGDPLFGKRNYTFMDAVSNILGGYSVTFCGIVQYLNLFGSAIGYTIAASLSMMAIKRSSCIQSSEGKNPCHISSNPYMIGFGAIQILFSQIPDFHNMWWLSIVAAVMSFAYSLIGLALGIAKIAETGTFKGSLTGVGIGTVTEAQKVWGVFQALGNIAFAYSYSFVLLEIQDTIKSPPSEVKTMKKAAKLSIAVTTTFYMLCGCTGYAAFGDSAPGNLLTGFGFSKLYWLIDIANAAIVIHLVGAYQVYAQPLFAFIEKEAARRWPKIDKEFKISIPGLQPYNQNIFNLVWRTVFVIITTLIAMLLPFFNDVLGLIGALGFWPLTVYFPVEMYILQKKIPKWSTRWICLELMSVVCLIVTIVAGLGSVVGVLLDLKKYKPLSSYN 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00205 486 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 5 479 - -
Cca03g00205 486 Pfam Transmembrane amino acid transporter protein 44 473 IPR013057 -
Cca03g00205 486 PANTHER OS05G0424000 PROTEIN-RELATED 5 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00205 Cca-Chr3 3099400 3105796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00205 22 484 Organic Solute Cotransporters AT5G09220 70.450 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00205 K24917 - gmx:100817699 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00205 03 3099400 3105796 Cca05g00927 05 24868240 24871532 PCT