Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00916 ATGGCGGAGCAGGCGGCTCCTCTCGGCGGCGGCGATTCGTCGTCGGCGGCGAGGGCTCCGTCGTCGTTCGTGAAGAAAGGCGACCGGCAAATGTTCACGGTGGAGCTCCGCCCCGGAGAGACCACCATAGTGTCGTGGAAGAAGCTGATGAAGGACGCCAACAAGGTTAACAATGGATCCGTTTCCGCTCCCGAGCACCACCCCAATGTGAACCCTGCGCTCGAGTCAAGAATCGCTCCGGGACAACCTAAGGAGATTGAAGAGCAGGGTGCTCCTCAGACTAACCGTTTCAGTGCTGTAATAGAGAAGATTGAGCGCCTTTACATGGGTAAGGACAGTAGTGATGATGAGGATCTACTTGATGTTCCCGATGATCAGTATGATACTGAAGACTCTTTTATTGATGATGCTGAATTGGATGAGTATTTTGAGGTCGATAATTCTGCAATCAAACATGATGGCTTTTTTGTAAATAGGGGGAAATTGGAACGCATAAATGAACCTCCGGTATTACCTATCCAGCAAGCAAAGAAAAGGCGCCGAAAAGATATACCAAAGAATCCTGGTGAAAATATTGATGGTCATGTATCAAATAAACATGTGAAAGTGGGAAAGACTACTGCTGGAAAGGCTTCATCATTACATGTGAAAAATACAATTAGTTCCTCAAATAATTTGGGTGTACCCAGTGATCATTGTGAAGACATGAAATTTCGGAATCAATTGGATGTCTCTGGAATTAGTTTGAAAAAGAAAACTTCTGACAGTAGACAAATGTCTGATCCTCCTGTCTGTTCGAAAGTATCAACTGATGATGCTCCTACTGCTGCAGAAGAGGCTGATAAACAGAAGACCGGATCACTTCAATCTAAGAACATGAGTGATAAATATAAAGATGCAACTGGATTTCTTGATACTTCTCATCAGAAGTACCATGAAAAAAGTGCATCTGCACATTCCAAACCCCAGCCTGGAAAAACCTCAAGTAGTGTTGACAATTTAGAAAACACTGGTCGGTCAAAGGATAAAATTGCCATACGTGTACTGCCAGATCTTAACTTATCTGTCATGGCAAAACCTGCTATACAAGCACCACTTATGCAGAAATCTGAAAATGTGCTCAAGAAGGATGGTTCTAGTGCTAGGCCAAAAACTACAACGCTTGAGAAAGCTATTCGAGAGTTGGAGAAGATGGTTGCAGAATCAAGGCCACCAACTATGGAAAACCAGGAGGCTGATACCACACCTCAGGCTGTCAAACGGAGATTGCCCAGAGAAATAAAGCTAAAACTTGCTAAAGTTGCTAGATTAGCGCCGGCAAGCCAGGGGAAAGTATCAGAGGAGTTAACTAACCGTCTTATGAGTATTCTTGGGCATCTGATGCAGCTCAGAACGCTAAAGAGAAACTTAAAAACTATGATCAGTATGGGTTTATCTGAGAAAAATGATAGGATTCAACAGATAAAGAAGGAAGTTGTTGAGATGATTAAGAAGCAGGCCCCATCTATGGAATCCAAGCTACAGCAGTTAGCTGGAGCATCTGGGGAACAAGAATTAGTTCATGATGGAAAACCAACAACTAAAAGGAATTTTAGTATGGACACTGCATTGGAAGACAAGATTTATGATCTCTACAACCTTTTTGCTGAAGGGTTAGATGAAGGTTCTCGCAAAAAGTTGTATGCAGAGGTGGTTCAAATGGATTGCTAG 1710 0.4322 MAEQAAPLGGGDSSSAARAPSSFVKKGDRQMFTVELRPGETTIVSWKKLMKDANKVNNGSVSAPEHHPNVNPALESRIAPGQPKEIEEQGAPQTNRFSAVIEKIERLYMGKDSSDDEDLLDVPDDQYDTEDSFIDDAELDEYFEVDNSAIKHDGFFVNRGKLERINEPPVLPIQQAKKRRRKDIPKNPGENIDGHVSNKHVKVGKTTAGKASSLHVKNTISSSNNLGVPSDHCEDMKFRNQLDVSGISLKKKTSDSRQMSDPPVCSKVSTDDAPTAAEEADKQKTGSLQSKNMSDKYKDATGFLDTSHQKYHEKSASAHSKPQPGKTSSSVDNLENTGRSKDKIAIRVLPDLNLSVMAKPAIQAPLMQKSENVLKKDGSSARPKTTTLEKAIRELEKMVAESRPPTMENQEADTTPQAVKRRLPREIKLKLAKVARLAPASQGKVSEELTNRLMSILGHLMQLRTLKRNLKTMISMGLSEKNDRIQQIKKEVVEMIKKQAPSMESKLQQLAGASGEQELVHDGKPTTKRNFSMDTALEDKIYDLYNLFAEGLDEGSRKKLYAEVVQMDC 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00916 569 MobiDBLite consensus disorder prediction 282 296 - -
Cca05g00916 569 MobiDBLite consensus disorder prediction 249 265 - -
Cca05g00916 569 MobiDBLite consensus disorder prediction 1 25 - -
Cca05g00916 569 MobiDBLite consensus disorder prediction 56 95 - -
Cca05g00916 569 MobiDBLite consensus disorder prediction 320 335 - -
Cca05g00916 569 PANTHER WOUND-RESPONSIVE FAMILY PROTEIN 17 567 - -
Cca05g00916 569 MobiDBLite consensus disorder prediction 249 296 - -
Cca05g00916 569 MobiDBLite consensus disorder prediction 168 232 - -
Cca05g00916 569 Coils Coil 478 498 - -
Cca05g00916 569 MobiDBLite consensus disorder prediction 174 200 - -
Cca05g00916 569 MobiDBLite consensus disorder prediction 211 229 - -
Cca05g00916 569 Pfam HPC2 and ubinuclein domain 124 163 IPR014840 -
Cca05g00916 569 PANTHER CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS 17 567 - -
Cca05g00916 569 MobiDBLite consensus disorder prediction 309 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00916 Cca-Chr5 24654103 24670080 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00916 - - gmx:100795185 890.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00916 05 24654103 24670080 Cca05g00916 05 24654103 24670080 ECH
Cca05g00916 05 24654103 24670080 Cca03g01089 03 26504200 26512817 PCT