Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01089 ATGAATTCGGCTCCGGCGATGGCGGAGGAGAAGAGGGCCTCCTCGTCCTTCGTCAAGAAAGGCGACCGGCAAATGTTCACGGTGGAGCTCCGCCCAGGCGAGACCACCATAGTCTCGTGGAAGAAGCTGATGAAGGACGCCAACAAGCCCAACGGATCCACTTCGGCAGCGCCACACGTCGCAATCGCTCCGGGTCAACCTGTTGAGGATGAAGAAAAAGATCCTTCTCAGCCAAACCGTTTCAGTGCTGTGATAGAGAAGATTGAACGACTTTACATGGGTAAGGATAGTAGtgatgatgaggatctgcttgatgttcctgatgatgatcagtatgatACAGAAGACTCATTTATAGATGATGCTGAACTGGATGAATATTTTGAGGTTGACAATTCTGCAATCAAACATGATGGGTTCTTTGTAAATAGGGGGAAATTGGAACGCATACATGAACCTCCTGCAGTACCTAACCAGCAACCAAAGAAAAGACGTAGAAAAGATATATTGAAGAATGCTGGTGAAAACAACGACAATCATGGATCAAATAAAACTGCTAAAGTTGGCAGGCCAGCATCTGGCAAAACAGCTTCATTACAGGAAAAGAATACGTTGAATTCCTCTGAGAATTTGGTTGCACCTGGTGAACATTATGATGATTTGAAACTTCTGAATCAATTGGATATCTCTGGAATTGTTTCGAAAAAGAAAACTGCTGATACAAAACCAATATTGGACCCTTTTGTCTCTTTGAAAATATCAAGTGATGATGTTCCTGCTGTAACAGATGCAAAAGAAGCTGATAAGCAGAAGACAGGAGCTTTTCAATCTAAGAACGTTAGTGATAAATATAAAGATGCAAGTGAAAAAGGTGCTTTTGGTCATTCCAAATCCCAACCTGGAAGATCCCCTGGTAATATTGATGATTTTGAAAATATCAATCGGACAAAAGAAAAAAATGGTATGCGTGAACTGCCAGATCTTAACTTGTCTGAGGGAAAGTCTGCTACTCAAGCAACGAAATCTGATAACTTGCACAAGAAAGATGGTTCAAGTGTTAGGCCAAAATCTTCAATGCTTGAAAAGTCTCTTCGTGAGTTGGAAAAAATGGTTGCAGAATCTAGACCACCAGCAGTGGATAATCAGGAGGCTGATACTACACCCCAGGCAATTAAAAGGAGGTTGCCTAGAGAAATAAAGCTAAAGCTTGCTAAAGTTGCTAGACTAGCGGCAACCCACGGGAAAGTATCAAAAGAATTAATTAACCGACTTATGAGTATTCTTGGGCATCTGATTCAGCTAAGAACATTAAAGAGAAACTTAAAAATAATGATCAATATGGGTCTCTCAGCAAAGCAGGAGGAGGATAACAGGTTTCAACAGATAAAGAAGGAAGTTGTTGATATGATTAAGATGCAGGCCCCAACTCTGGAATCCAAGCAGCAGCAGAAAGGTGGAACATCCGGTGATTTTCAAGAATTTAGTCCTGATGGAAAACCAATAACTAAAAGGAAGTTTATTATGGATGCTGCATTGGAGGACAAGATTTGTGATCTCTATGATCTTTTTGTTGATGGGTTGGATGAAAATGCAGGTCCACAGATCAGAAAGTTGTATGCTGAGGTGGTTTAA 1632 0.4013 MNSAPAMAEEKRASSSFVKKGDRQMFTVELRPGETTIVSWKKLMKDANKPNGSTSAAPHVAIAPGQPVEDEEKDPSQPNRFSAVIEKIERLYMGKDSSDDEDLLDVPDDDQYDTEDSFIDDAELDEYFEVDNSAIKHDGFFVNRGKLERIHEPPAVPNQQPKKRRRKDILKNAGENNDNHGSNKTAKVGRPASGKTASLQEKNTLNSSENLVAPGEHYDDLKLLNQLDISGIVSKKKTADTKPILDPFVSLKISSDDVPAVTDAKEADKQKTGAFQSKNVSDKYKDASEKGAFGHSKSQPGRSPGNIDDFENINRTKEKNGMRELPDLNLSEGKSATQATKSDNLHKKDGSSVRPKSSMLEKSLRELEKMVAESRPPAVDNQEADTTPQAIKRRLPREIKLKLAKVARLAATHGKVSKELINRLMSILGHLIQLRTLKRNLKIMINMGLSAKQEEDNRFQQIKKEVVDMIKMQAPTLESKQQQKGGTSGDFQEFSPDGKPITKRKFIMDAALEDKICDLYDLFVDGLDENAGPQIRKLYAEVV 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01089 543 MobiDBLite consensus disorder prediction 101 115 - -
Cca03g01089 543 MobiDBLite consensus disorder prediction 151 206 - -
Cca03g01089 543 Pfam HPC2 and ubinuclein domain 106 148 IPR014840 -
Cca03g01089 543 MobiDBLite consensus disorder prediction 264 360 - -
Cca03g01089 543 MobiDBLite consensus disorder prediction 311 325 - -
Cca03g01089 543 PANTHER CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS 7 542 - -
Cca03g01089 543 MobiDBLite consensus disorder prediction 46 79 - -
Cca03g01089 543 MobiDBLite consensus disorder prediction 158 174 - -
Cca03g01089 543 MobiDBLite consensus disorder prediction 476 495 - -
Cca03g01089 543 MobiDBLite consensus disorder prediction 476 490 - -
Cca03g01089 543 MobiDBLite consensus disorder prediction 341 360 - -
Cca03g01089 543 MobiDBLite consensus disorder prediction 92 115 - -
Cca03g01089 543 PANTHER WOUND-RESPONSIVE FAMILY PROTEIN 7 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01089 Cca-Chr3 26504200 26512817 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01089 - - gsj:114415452 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01089 03 26504200 26512817 Cca03g01089 03 26504200 26512817 ECH
Cca05g00916 05 24654103 24670080 Cca03g01089 03 26504200 26512817 PCT