Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00909 ATGCGGATTTTTGAGAAGGTTGACATGAATGGTGATGGGTTTTTGAGCCTTGAGGAGCTTCACTTGCTGCTAGAGAAAACAGGGTTCAATTTGAGCGTGGAAGAATTGGAGTCTCTTGTGGGAAAGAAGAGGCTTGACTTCAGTGAGTTTTTGTTGTTTTATGAATCCATGTTGAAGCAGGGGAATGAGGAAGAGGAGGAAGAGGGGGATAATGGGGGTGGTGATGAGGACCTTGTGGAGGCTTTCAAAGTGTTTGATATGGATGGGGATGGATTCATCACAAGCCAAGAGCTTGAGTGTGTGTTGAAGAGGCTTGGCATGTTGGACGAACTCTGTGGCAAGGATTGCACCACCATGATTTGCTCCTACGACACTAATTTTGATGGCAAGCTTGATTTTCACGAGTTTAAGGACATGATGCTGCTCACAACTTTGTGA 438 0.4521 MRIFEKVDMNGDGFLSLEELHLLLEKTGFNLSVEELESLVGKKRLDFSEFLLFYESMLKQGNEEEEEEGDNGGGDEDLVEAFKVFDMDGDGFITSQELECVLKRLGMLDELCGKDCTTMICSYDTNFDGKLDFHEFKDMMLLTTL 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00909 145 SUPERFAMILY EF-hand 2 141 IPR011992 -
Cca05g00909 145 Gene3D - 1 56 - -
Cca05g00909 145 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 2 143 - -
Cca05g00909 145 ProSitePatterns EF-hand calcium-binding domain. 8 20 IPR018247 -
Cca05g00909 145 ProSitePatterns EF-hand calcium-binding domain. 86 98 IPR018247 -
Cca05g00909 145 Pfam EF-hand domain pair 76 140 IPR002048 GO:0005509
Cca05g00909 145 ProSiteProfiles EF-hand calcium-binding domain profile. 73 108 IPR002048 GO:0005509
Cca05g00909 145 CDD EFh 78 140 IPR002048 GO:0005509
Cca05g00909 145 Pfam EF hand 3 22 IPR002048 GO:0005509
Cca05g00909 145 ProSiteProfiles EF-hand calcium-binding domain profile. 111 145 IPR002048 GO:0005509
Cca05g00909 145 ProSiteProfiles EF-hand calcium-binding domain profile. 1 30 IPR002048 GO:0005509
Cca05g00909 145 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 2 143 - -
Cca05g00909 145 SMART efh_1 1 27 IPR002048 GO:0005509
Cca05g00909 145 SMART efh_1 115 143 IPR002048 GO:0005509
Cca05g00909 145 SMART efh_1 77 105 IPR002048 GO:0005509
Cca05g00909 145 Gene3D - 73 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00909 Cca-Chr5 24483094 24483747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00909 2 141 EF-hand Containing Proteins AT1G21550 41.844 5.19e-30 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00909 K13448 - gmx:100500561 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00909 05 24483094 24483747 Cca05g00909 05 24483094 24483747 ECH
Cca05g00909 05 24483094 24483747 Cca03g01081 03 26379803 26380666 PCT