Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01081 ATGTTATTATCTGACAACATGTGTCTCCTAACCCCAAGTGACTTGCATCGTATTTTTGAGAAACTGGACGTGAATAACGACGGATTGGTGTGCCTTGAGGAGCTGAACAGGCTGCTCCAGATGACAGGTAATTCTTGCCATTACAGCTTAGAAGAGTTGGAATCTCTAGTGGAAAAGAAGAGCCTCGGTTTCAGCGAGTTTTTGTTCTTCTACAACTCTATATCGGAGCAGAAGAATGGAGAGAGTAGAGGAGGTGAAGACACTGAGGAGTTGGAGAGCGATCTGGTGAAGACTTTCAAGGTGTTTGACTTGGATGGTGATGGTTTCATCACAAGCCAAGAGCTTGAGTGCGTCTTGAAGAGGCTTGGCTTGTGGGATGGCAAGGATTGCAGAACCATGATTCGGTTCTATGACACCAATTTGGATGGACGCCTTGATTTTCAGGAGTTCAAGACCATGATGTTGCTTACCAAAGCTTGA 480 0.4521 MLLSDNMCLLTPSDLHRIFEKLDVNNDGLVCLEELNRLLQMTGNSCHYSLEELESLVEKKSLGFSEFLFFYNSISEQKNGESRGGEDTEELESDLVKTFKVFDLDGDGFITSQELECVLKRLGLWDGKDCRTMIRFYDTNLDGRLDFQEFKTMMLLTKA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01081 159 Pfam EF hand 18 38 IPR002048 GO:0005509
Cca03g01081 159 Gene3D - 11 157 - -
Cca03g01081 159 ProSiteProfiles EF-hand calcium-binding domain profile. 90 125 IPR002048 GO:0005509
Cca03g01081 159 SMART efh_1 94 122 IPR002048 GO:0005509
Cca03g01081 159 SMART efh_1 129 157 IPR002048 GO:0005509
Cca03g01081 159 SMART efh_1 14 42 IPR002048 GO:0005509
Cca03g01081 159 SUPERFAMILY EF-hand 14 156 IPR011992 -
Cca03g01081 159 ProSitePatterns EF-hand calcium-binding domain. 23 35 IPR018247 -
Cca03g01081 159 Pfam EF-hand domain pair 94 154 IPR002048 GO:0005509
Cca03g01081 159 ProSitePatterns EF-hand calcium-binding domain. 103 115 IPR018247 -
Cca03g01081 159 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 7 158 - -
Cca03g01081 159 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 7 158 - -
Cca03g01081 159 ProSiteProfiles EF-hand calcium-binding domain profile. 10 45 IPR002048 GO:0005509
Cca03g01081 159 CDD EFh 94 154 IPR002048 GO:0005509
Cca03g01081 159 ProSiteProfiles EF-hand calcium-binding domain profile. 128 159 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01081 Cca-Chr3 26379803 26380666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01081 8 155 EF-hand Containing Proteins AT1G21550 42.105 3.49e-31 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01081 K13448 - gmx:100527117 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01081 03 26379803 26380666 Cca03g01081 03 26379803 26380666 ECH
Cca05g00909 05 24483094 24483747 Cca03g01081 03 26379803 26380666 PCT