Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00835 ATGGAACGTGCTCGCAGGCTCGCGAACCGCGCCATTCTGAAGCGTCTGGTTTCAGAGGCGAAGCAGTACCAGAAGAATGAGTCCTTTCTGCAGTCTTCCACCACCCCCATGCTGTTGTACTCTTCCTCCAGGTGCATGTCCTCTGTTTCTTCCCCTGTTCTGCGAAACAGGGGAGCCAAAACAGAGAGCCTCCTGGGGAGGAACATGAGCATCACCAACATCTCACGTGGAGTTGTCGGTGGTGGTTTTCTCAGTGTTGGCTCAACCCGATCCATCTCGGTTGAAGCGCTTCAACCGAGCGACACGTTCCCCCGCCGCCACAACTCTGCCACCCCTGAGGAACAGAGCAAGATGGCAGTGTCTTGTGGCTTTGAGAGCCTTGATTCCCTGGTTGATGCCACCGTGCCTAAATCAATTCGCTTGAGTGACATGAAGTTCGGAAAATTCGATGCCGGGTTGACAGAGAACCAAATGATTGAGCACATGAAGTATTTGGCCTCAaagaacaaggttttcaagtcctacattgggatggggtactacaacactcatgttccaccagtgatcttgaggaacataatggagaaccctgcatggtacactcagtacactccttaccaggctgagatatctcaagggaggcttgagtcactgctgaattaccaaaccatgatcactgacctcactggcttgcctatgtccaatgcttcattgcttgatgagggcactgctgcagctgaggcaatgtccatgtgcaaccacattcaaaaagggaagaagaagaccttcatcattgcaagcaactgccaccctcagaccattgacatttgcaagacaagggcagctggatttgatctcaaggttgtgtcacaagatcttaaggacattgattacaagtctggggatgtttgtggggtgcttgttcagtaccctgggaccgagggtgaggtgttggactatggggagttcatcaagaaggctcatgctcatgaggtgaaggttgtgatggcaagtgatttgttggcactcactgtgttgaagcctcctggtgagctgggggcagatattgttgttggctcagctcagaggtttggggtgccaatggggtatggaggccctcatgcagctttcTTGGCCACATCACAAGAGTACAAGAGGATGATGCCTGGGAGAATCATTGGAGTCAGTGTTGACTCTTCTGGAAAGACTGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGGCTACCAGCAACATTTGCACTGCTCAGGCACTGCTTGCAAACATGGCTGCCATGTATGCTGTGTATCATGGACCTGAAGGCCTTAAGAACATTGCACACCGTGTTCATGGTCTTGCTGGGGCATTTGCTCTTGGATTAAAGAAACTTGGAACGGTGGAAGTTCAGGACCTTCCCTTCTTTGACACTGTGAAGATCAAGACTTCCAATGCGCATGCAATTGCTGATGCTGCTATCAAAAATGAAATTAACTTGCGAGTTGTAGATGGAAACACTATCACTGTTGCTTTTGATGAAACAACCACACTAGAGGATGTTGATAAGCTTTTCAAAGTTTTTGCTGGTGGAAAGCCAGTCTCCTTCACAGCTGCAACTATTGCATCAGAAGTTCAGAGTGCAATTCCTTCTGGACTAGCTAGGAAGAGCCCTTATCTGACACACCCTATCTTTAACACGTACCAAACTGAGCATGAGTTGCTTAGATACTTACATAGGCTACAATCAAAAGATCTCTCACTATGCCACAGTATGATCCCACTGGGATCTTGTACAATGAAGCTGAATGCAACAACTGAAATGATGCCTGTGACATGGCCCAGCTTCACTGATATTCATCCTTTTGCACCAATTGACCAGGCTGAAGGTTATCAGGAAATGTTCAACAATTTGGGTGAACTGTTGTGTACCATCACCGGGTTTGACTCCTTCTCTTTGCAACCAAATGCTGGTGCTGCTGGAGAATATGCTGGACTGATGGTTATTCGTGCATATCATTTGGCAAGGGGAGACCACCACCGCAATGTTTGCATTATACCTGTCTCAGCACATGGTACAAATCCTGCTAGTGCTGCTATGTGTGGAATGAAAATTGTATCTGTTGGAACTGATGCCAAGGGAAACATTAACATAGAAGAGTTGAGGAAGGCTGCTGAAACACACAAGGACAACTTATCAGCACTTATGGTAACATATCCTTCAACCCATGGTGTTTATGAAGAAGGTATTGATGAGATTTGCAAGATTATTCATGATAATGGAGGCCAAGTATATATGGATGGTGCCAACATGAATGCTCAGGTGGGACTCACAAGCCCAGGTTGGATTGGAGCAGATGTTTGCCATCTCAATCTCCACAAGACATTTTGCATTCCTCATGGAGGAGGTGGCCCTGGAATGGGTCCTATTGGTGTAAAGAAACACTTGGCACCATTTTTACCTTCACACCCTGTGATATCAACTGGTGGAATTCCTGCCCCTGACCAATCTCAACCACTTGGTACCATCTCTGCTGCACCATGGGGCTCAGCACTCATATTGCCAATCTCTTACACTTACATAGCCATGATGGGTTCTAAAGGACTCACCGATGCATCAAAGATAGCCATTTTGAATGCAAACTACATGGCTAAACGATTGGAGAATTATTACCCGGTTCTTTTCCGCGGAGTCAATGGAACAGTTGCTCATGAGTTCATCATTGACTTAAGAGGCTTTAAGAATACTGCTGGAATTGAGCCTGAAGATGTTGCAAAGCGCCTCATGGACTATGGTTTTCATGCACCAACAATGTCATGGCCTGTTCCTGGCACACTCATGATTGAGCCTACTGAGAGTGAAAGCAAGGCTGAGTTAGACAGGTTCTGTGATACTCTTATTTCCATTAGACAAGAAATTGCTGAGATTGAGAAAGGAAATGCTGACATCAACAACAACGTACTTAAGGGAGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCATACTCCAGGGAATATGCAGCCTTCCCAGCTCCATGGCTCCGTGTTTCAAAGTTCTGGCCTAGCACAGGACGTGTTGATAATGTGTACGGTGACCGCAACCTGATCTGCACCCTTCACCCAGCATCACAGGGTGTTGAAGAAGAAGCTGCAGCCACAGCCTAG 3192 0.3753 MERARRLANRAILKRLVSEAKQYQKNESFLQSSTTPMLLYSSSRCMSSVSSPVLRNRGAKTESLLGRNMSITNISRGVVGGGFLSVGSTRSISVEALQPSDTFPRRHNSATPEEQSKMAVSCGFESLDSLVDATVPKSIRLSDMKFGKFDAGLTENQMIEHMKYLASKNKVFKSYIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMSMCNHIQKGKKKTFIIASNCHPQTIDICKTRAAGFDLKVVSQDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGEFIKKAHAHEVKVVMASDLLALTVLKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKTALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKNIAHRVHGLAGAFALGLKKLGTVEVQDLPFFDTVKIKTSNAHAIADAAIKNEINLRVVDGNTITVAFDETTTLEDVDKLFKVFAGGKPVSFTAATIASEVQSAIPSGLARKSPYLTHPIFNTYQTEHELLRYLHRLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFTDIHPFAPIDQAEGYQEMFNNLGELLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHLARGDHHRNVCIIPVSAHGTNPASAAMCGMKIVSVGTDAKGNINIEELRKAAETHKDNLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVISTGGIPAPDQSQPLGTISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNANYMAKRLENYYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDTLISIRQEIAEIEKGNADINNNVLKGAPHPPSLLMADAWTKPYSREYAAFPAPWLRVSKFWPSTGRVDNVYGDRNLICTLHPASQGVEEEAAATA 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00835 1063 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 97 1054 IPR003437 GO:0004375|GO:0006544
Cca05g00835 1063 CDD GDC-P 575 970 IPR020581 GO:0004375|GO:0006546
Cca05g00835 1063 CDD GDC-P 155 532 IPR020581 GO:0004375|GO:0006546
Cca05g00835 1063 Gene3D Aspartate Aminotransferase, domain 1 175 528 IPR015422 GO:0003824
Cca05g00835 1063 PANTHER GLYCINE CLEAVAGE SYSTEM P PROTEIN 1 1063 - -
Cca05g00835 1063 Gene3D Aspartate Aminotransferase, domain 1 866 1001 IPR015422 GO:0003824
Cca05g00835 1063 SUPERFAMILY PLP-dependent transferases 106 532 IPR015424 -
Cca05g00835 1063 SUPERFAMILY PLP-dependent transferases 571 1049 IPR015424 -
Cca05g00835 1063 Pfam Glycine cleavage system P-protein 549 825 IPR020581 GO:0004375|GO:0006546
Cca05g00835 1063 Pfam Glycine cleavage system P-protein 106 532 IPR020581 GO:0004375|GO:0006546
Cca05g00835 1063 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 1 1063 IPR020581 GO:0004375|GO:0006546
Cca05g00835 1063 TIGRFAM gcvP: glycine dehydrogenase 106 1047 IPR003437 GO:0004375|GO:0006544
Cca05g00835 1063 Coils Coil 722 742 - -
Cca05g00835 1063 Gene3D - 614 865 IPR015421 GO:0003824
Cca05g00835 1063 Gene3D - 186 446 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00835 Cca-Chr5 22942249 22949618 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00835 K00281 - gmx:100819714 1995.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00835 05 22942249 22949618 Cca03g01740 03 36519030 36525789 PCT