Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01740 ATGGAACGTGCACGGAGGCTCGCAAACAGAGCGATTCTCAGGAGGCTGATCTACCAGCCCAAGAATGATCCTTCTCACTCGAGGCGCGTCTCATCTCTTTCTCACTCCCTTTCAAGACGCAAACCAGACAACTTGATCCAAAACAACACAAGCCTCGCGTACCGATCCATCTCCGTTGAGGCGCTCAAACCCAGCGACACGTTCCCCCGGCGGCACAACTCCGCCACCGCCGAAGAACAGAAGAAGATGTCGCAGACGTGCGGGTTCGACTCGCTGGACTCCCTGATCGACGCCACGGTTCCCAAGTCGATCCGTCTGAAGGACAACGACATGTCGTTCAGCACCTTCAACGATGGCCTAACAGAGGCCGAAATGGCGTCGCACATGGCGCGCCTGGCCTCGaagaacaagtgcttcaagtcccacatcgggatgggctactacaacacgcacgtgcctcccgtgatcctgcggaacatcatggagaacccggcgtggtacacgcagtacactccctaccaagctgaaatatcccaggggcgtctcgagtctctcatcaatttccaaaccatgatttctgatctcaccgcgcttcccatgtccaacgcttccttgctcgacgaaggaaccgcggctgctgaggcaatgtccatgtgcaacaacattcacaaggggaagaggaagacgtttgtgattgccaacaactgtcaccctcagaccgttgatatttgcaagaccagagcggcgggtttcggcattaacgttgttgttgccgatgttaaggatgtcgattacggatccggtgatgtttgtggggttcttgttcagtacccggggactgagggtgaggttttcgactatggggagtttgtgaaggaggctcatgctcatggagttaaggttgttatggccactgatttgttggctctgactctgttgaagcctcccggggaagtgggggcggatattgttgttgggtcggcccagaggtttggagttccgatgggctatgggggcccacatgctgcgttccTGGCCACTTCGCAGGAGTATAAGAGGATGATGCCGGGAAGGATCATTGGGGTCAGTGTTGATTCTTGTGGAAGGCCAGCTTTGAGAATGGCCATGCAAACTAGGGAGCAGCATATAAGAAGGGACAAGGCCACCAGCAACATTTGCACTGCTCAGGCACTGCTTGCCAACATGGCTGCTATGTATGCTGTGTATCATGGACCTGAAGGACTGAAGACCATTGCTGAAAGGGTTCATGGTCTTGCTGGGGTGTTTGCCCTGGGATTGAAGAAACTTGGAACGGTGGAAGTTCAGGACCTTCCGTTCTTTGATACCGTGAAAATTAAGACTGCCAATGCCCATGCAATTGCTGATGCTGCTCGCAAAAGTGAAATAAATTTGCGGGTTGTTGATGGGAACACAATCACTGTTGCCTTTGATGAAACAACAACCTTGGAGGATGTTGATAATCTTTTCAAAGTTTTTTCTGACAGCAAGCCTATCTCCTTCACAGCCGCATCTCTTGCACCAGAAGTTCAGACTGCACTCCCTTCTGGACTAATTAGGAAGAGTCCTTATCTGACACACCCTATCTTTAACATGTACCACACTGAGCATGAGTTGCTCAGGTACATTCATAGACTACAATCAAGAGATCTTTCATTGTGCCACAGTATGATCCCTCTGGGATCTTGTACAATGAAGCTGAATGCAACTACTGAAATGATGCCTGTGACATGGCCTAGCTTTGCCAACATTCACCCTTTTGCACCAATTGAACAGGCTCAAGGTTATCAGGAAATGTTTGAAAATTTGGGTAACCTTTTGTGTGCAATCACTGGGTTCGACTCCTTCTGCTTGCAACCTAATGCTGGTGCTGCTGGTGAATATGCTGGACTCATGGTTATTCGTGCATATCACATGGCAAGAGGAGACCACCACCGCAATGTTTGCATTATACCAGTCTCGGCACATGGTACAAATCCTGCCAGTGCTGCTATGTGTGCAATGAAAATTGTATCTGTTGGAACTGATGCCAAGGGAAACATCAATATTGAAGAGTTGAGGAAGGCTGCTGAAACACACAAGGACAACTTATCTGCACTTATGGTAACATATCCTTCAACACATGGTGTTTACGAAGAAGGTATTGATGAGATATGCAAGATTATTCACGATAACGGAGGTCAAGTATATATGGATGGTGCTAACATGAATGCACAGGTGGGACTTACAAGCCCAGGTAGGATTGGAGCAGATGTTTGCCACTTGAATCTCCATAAAACATTTTGCATCCCTCATGGAGGAGGTGGTCCTGGCATGGGTCCTATTGGAGTAAAGAAGCACTTGGCACCATTTTTACCTTCACATCCGGTGATCCCCACTGGGGCCTTTCCTGCCCCTGACAAGTCGCAGCCACTTGGTACCATTTCTGCTGCACCATGGGGCTCAGCACTGATATTGCCTATCTCATACTCGTACATAGCCATGATGGGTTCTAAAGGACTTACTGAAGCGTCAAAAATTGCCATTTTGAATGCAAACTATATGGCTAAACGATTGGAGAGTCATTACCCTGTTCTTTTCCGTGGGGTCAATGGAACAGTTGCTCATGAATTTATTATTGACTTGAGAGGCTTTAAGAATACTGCTGGGATAGAGCCTGAAGATGTTGCAAAGCGCCTTATGGACTATGGCTTTCATGGACCAACAATGTCATTTCCTGTGCCAGGCACACTCATGATTGAACCCACTGAAAGTGAAAGCAAGGCTGAGTTAGACAGGTTTTGTGATGCTCTTATTTCCATTCGACAAGAAATTGCTGAGATTGAGAAAGGAAAGGCTGACATTAACAACAATGTACTTAAGGGTGCCCCTCACCCACCATCACTGCTCATGGGAGATGCATGGACAAAACCATACTCTCGAGAATACGCAGCCTTCCCAGCTTCCTGGCTCCGTGCTTCCAAGTTCTGGCCTTCAACAGGACGAATTGATAACGTGTACGGTGACCGCAACCTGGTTTGCACCCTTCTCCCAGCATCACAGGCCGAAGACCAAGCTGTTGCAACGGCCTAA 3090 0.3803 MERARRLANRAILRRLIYQPKNDPSHSRRVSSLSHSLSRRKPDNLIQNNTSLAYRSISVEALKPSDTFPRRHNSATAEEQKKMSQTCGFDSLDSLIDATVPKSIRLKDNDMSFSTFNDGLTEAEMASHMARLASKNKCFKSHIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLINFQTMISDLTALPMSNASLLDEGTAAAEAMSMCNNIHKGKRKTFVIANNCHPQTVDICKTRAAGFGINVVVADVKDVDYGSGDVCGVLVQYPGTEGEVFDYGEFVKEAHAHGVKVVMATDLLALTLLKPPGEVGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSCGRPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAERVHGLAGVFALGLKKLGTVEVQDLPFFDTVKIKTANAHAIADAARKSEINLRVVDGNTITVAFDETTTLEDVDNLFKVFSDSKPISFTAASLAPEVQTALPSGLIRKSPYLTHPIFNMYHTEHELLRYIHRLQSRDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPIEQAQGYQEMFENLGNLLCAITGFDSFCLQPNAGAAGEYAGLMVIRAYHMARGDHHRNVCIIPVSAHGTNPASAAMCAMKIVSVGTDAKGNINIEELRKAAETHKDNLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGRIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVIPTGAFPAPDKSQPLGTISAAPWGSALILPISYSYIAMMGSKGLTEASKIAILNANYMAKRLESHYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSFPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGKADINNNVLKGAPHPPSLLMGDAWTKPYSREYAAFPASWLRASKFWPSTGRIDNVYGDRNLVCTLLPASQAEDQAVATA 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01740 1029 TIGRFAM gcvP: glycine dehydrogenase 71 1014 IPR003437 GO:0004375|GO:0006544
Cca03g01740 1029 Gene3D - 581 808 IPR015421 GO:0003824
Cca03g01740 1029 Gene3D - 153 413 IPR015421 GO:0003824
Cca03g01740 1029 Coils Coil 689 709 - -
Cca03g01740 1029 SUPERFAMILY PLP-dependent transferases 537 1015 IPR015424 -
Cca03g01740 1029 Gene3D Aspartate Aminotransferase, domain 1 829 968 IPR015422 GO:0003824
Cca03g01740 1029 CDD GDC-P 542 937 IPR020581 GO:0004375|GO:0006546
Cca03g01740 1029 MobiDBLite consensus disorder prediction 20 42 - -
Cca03g01740 1029 Gene3D Aspartate Aminotransferase, domain 1 142 495 IPR015422 GO:0003824
Cca03g01740 1029 SUPERFAMILY PLP-dependent transferases 71 498 IPR015424 -
Cca03g01740 1029 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 62 1021 IPR003437 GO:0004375|GO:0006544
Cca03g01740 1029 PANTHER GLYCINE CLEAVAGE SYSTEM P PROTEIN 1 1027 - -
Cca03g01740 1029 CDD GDC-P 122 499 IPR020581 GO:0004375|GO:0006546
Cca03g01740 1029 MobiDBLite consensus disorder prediction 24 42 - -
Cca03g01740 1029 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 1 1027 IPR020581 GO:0004375|GO:0006546
Cca03g01740 1029 Pfam Glycine cleavage system P-protein 71 499 IPR020581 GO:0004375|GO:0006546
Cca03g01740 1029 Pfam Glycine cleavage system P-protein 519 792 IPR020581 GO:0004375|GO:0006546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01740 Cca-Chr3 36519030 36525789 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01740 K00281 - gmx:100795673 1869.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00835 05 22942249 22949618 Cca03g01740 03 36519030 36525789 PCT