Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00794 ATGGCTTGTGTTTGTGTTTCAATGGCTTTGCCTCTTCGATCCACCAAAACCCTTCCATCCTCATCAGAAGCCTTCTTGAAGAGGAGTGTGGTTAAGAGTTCTTCATCAGAGGCAAAAGCACCGAATAGCATTGAAGCGTTGTCTTTGAAGGAAAAAGCAGTGAAGGGTCTCACAGCTGCAGCGTTAACGTCCTACGTGGTGATGCCAGAAGTGGCTCATGCAGCTGGAAACGACTTCTCACCTTCCCTCAAAAACTTTCTCCTCAGCATTGCCGCTGGTGGAGTTGTGCTCGTAGCAATATTGGGTGCTGTCATTGGAGTTTCCAACTTTGATCCAGTTAAGAGAACTTGA 351 0.4701 MACVCVSMALPLRSTKTLPSSSEAFLKRSVVKSSSSEAKAPNSIEALSLKEKAVKGLTAAALTSYVVMPEVAHAAGNDFSPSLKNFLLSIAAGGVVLVAILGAVIGVSNFDPVKRT 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00794 116 Gene3D Single helix bin 79 116 - -
Cca05g00794 116 PANTHER OS07G0673550 PROTEIN 3 116 - -
Cca05g00794 116 Pfam Photosystem II reaction centre X protein (PsbX) 80 115 IPR009518 GO:0009523|GO:0015979|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00794 Cca-Chr5 21922912 21924019 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00794 - - lang:109358190 115.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00794 05 21922912 21924019 Cca05g00794 05 21922912 21924019 ECH
Cca03g01691 03 36043843 36044208 Cca05g00794 05 21922912 21924019 ECH