Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01691 ATGGCTTCTGCTTCTGTTCCAACGGCATTACCTCCGAGCTCTGTCACCCATAACAAGCCTTCATCCGAAGCCTTCTTCAGGCCATTACCCCTTAGACAACAGAAGAGGACCCTCTTTACAAAGCCTCTCTCAAAATCCAAGGTTCAAATTAATGCATCCTTGAAGGAGAAGGCAGTGACCGGACTCACAGCAGCTTCCTTCACAGCCTCTATGGTGATTCCGGAGGTGGCTCACGCTGCTGGATCCGATTTCTCCCCATCACTCAAGAACTTTCTACTCAGCATCTTTGCTGGTGGGGTTCTGCTAGGAGCCATATTTGGAGCCGTTATTGGAGTTTCCAACTTTGATCCTGTTAAGAGAGCTTAA 366 0.4863 MASASVPTALPPSSVTHNKPSSEAFFRPLPLRQQKRTLFTKPLSKSKVQINASLKEKAVTGLTAASFTASMVIPEVAHAAGSDFSPSLKNFLLSIFAGGVLLGAIFGAVIGVSNFDPVKRA 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01691 121 Gene3D Single helix bin 84 121 - -
Cca03g01691 121 PANTHER OS07G0673550 PROTEIN 2 121 - -
Cca03g01691 121 PANTHER OS07G0673550 PROTEIN 2 121 - -
Cca03g01691 121 Pfam Photosystem II reaction centre X protein (PsbX) 85 120 IPR009518 GO:0009523|GO:0015979|GO:0016020
Cca03g01691 121 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01691 Cca-Chr3 36043843 36044208 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01691 - - gmx:100305487 187.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01691 03 36043843 36044208 Cca03g01691 03 36043843 36044208 ECH
Cca03g01691 03 36043843 36044208 Cca05g00794 05 21922912 21924019 ECH