Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00768 ATGGGGAAAGGAAGCGAAATGGAAGGCATTGAAGTACCTGAAGCCGTCACAGATACTCTCAGGAGTACTTTGGAGAGCCTTCAACAACTTGAAACTCAGTTACCCCAATTTCTCTCTCTCTCTGACCCTGAACTCCTCGCTGAGTTGCCACTCGTTCAACGCGCTCACTCACTCTTCTACCTCGCCAAACTCACTTCAACCCTCTTCTCATTGAAGTTGAGGTGCAGAGGGGTCAACCCAAATGGCCATCCCGTCAAATCAGAGCTTGACAAGATAAACGTGTTACAGAAGAAACTGGAACGATTTCCCCGATTGAGTGAAGCACAGAAGCAAGACGACTTGGGCAACATAAGTGGAGGGGAGGGACCAGATATGAACTATCAGGAACGGGCTGGTCAAAAGAGGAAGTATTCATCTTCTGAAGAACAGTTTGTTCAAATTGATGCCATGGAGTCTCTCAACAAAGAAAAGGAGGAACTTGGTGATAATAATGGAAATGTTAAGAGAGCAATAGTGATTGACATTTCAGATGATGATGAAGACGAGCTACTTGCCCCTTAG 561 0.4563 MGKGSEMEGIEVPEAVTDTLRSTLESLQQLETQLPQFLSLSDPELLAELPLVQRAHSLFYLAKLTSTLFSLKLRCRGVNPNGHPVKSELDKINVLQKKLERFPRLSEAQKQDDLGNISGGEGPDMNYQERAGQKRKYSSSEEQFVQIDAMESLNKEKEELGDNNGNVKRAIVIDISDDDEDELLAP 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00768 186 PANTHER EXOSOME-ASSOCIATED FACTOR RRP47/DNA STRAND REPAIR C1D-RELATED 1 182 - -
Cca05g00768 186 Coils Coil 150 170 - -
Cca05g00768 186 MobiDBLite consensus disorder prediction 105 142 - -
Cca05g00768 186 PANTHER SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR 1 182 IPR011082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00768 Cca-Chr5 21339589 21344652 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00768 K12592 - gmx:100500667 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00768 05 21339589 21344652 Cca05g00768 05 21339589 21344652 ECH
Cca05g00768 05 21339589 21344652 Cca03g01637 03 35407020 35408567 PCT