Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01065 ATGGCTAACAACGCAGCTGCCTGTGCTGAGAGAGCAACTAGTGACATGCTCATTGGTCCGGACTGGGCAATCAACATAGAGTTGTGTGATATCATTAATATGGATCCCGGGCAAGCAAAGGATGCATTAAAGATACTTAAGAAGCGTTTGGGCAGTAAAAATCCTAAAATACAGCTTCTGGCTCTGTTTGTACTGGAGACCCTTAGTAAAAATTGTGGTGAGAGTGTATTTCAGCAGATTGTTGAGCGGGATATCTTGCATGAAATGGTTAAGATAGTTAAGAAGAAGCCGGACTTAAATGTGAGGGAAAAGATACTGATTTTAATTGATACATGGCAAGAAGCTTTTGGGGGCCCAACTGGAGTATATCCTCAATACTATTCTGCCTATAATGAATTGAAGTCTGCTGGTGTTGAATTTCCACCACGAGATGAGAATAGCGTGCCATTCTTCACTCCTCCTCAAACTCAGCCAATTGTTCATTCTGCTGCCGAATTTGAAGATGCTACCATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAGTTTGCTAGAGATTCAAAATGCTCAAGGCCTAGCTGATGTATTGATGGAAATGCTTAGTGCCTTGAATCCGAAAGACCCTGAGGGTGTGAAGGAGGAAGTGATTGTTGACCTTGTTGACCAGTGCCGTTCATACCAAAAGCGGGTCATGCTTCTTGTGAACAATACTACGGATGAGCAGCTTTTAGGTCAGGGATTGACATTGAATGACAGCCTTCAGCGAGTACTCAGTCGACATGATGATATTGTAAAAGGAAATTCTGATTCAGGTGCTAGAGAAGCAGAAACTCCAGTTCTTCCACTTGTAAATGTAAACCCTGAAGATGATGAATCAGAAGATGATTTTGCTCAACTAGCCCACAGGTCATCACGTGATACTCTTGCACAAAATCGGAAACCAGCCTATGACAAGGCAGAACCAGGGAGGATAAACCCACTTATTCCCCCACCACCAGCATCAAGGAAGCCAGTCTACTCTGGGACCGGCATGGTTGACTATCTCAGTGGTGATGCATACAAGGCAGAAGGATCTTCCGAAAACTCAGAACCCCCTTCATTTGCCGGTCCCCTTCATTCCAGCCCTAATCCAACCTCATCAACTGTTCCATCACAGTCTTCATCTCGTCCTCCTGCTGTGAATACTTCATCACCAATTTTTAGCAGCCAGCCTGTGTATGATGAACAGCCATCTTCCGTGGACAAATCTTCAGAGCATCTGCCTCCAGCTCCCTGGGACTCGCAATCTCCTGGTCCTGGCATCATTCCACCCCCACCTTCAAAGTATAATCAAAGACAACAGTTTTTTGAGCAACAAGGTACATCTCATTCAAGTAGTGGATCCAGTTCCTCTTATGACAGCTTGGTGGGACAAACTCAAAATCTCTCCCTGAATTCATCCACCCCAACCAAACAACAGAAGCCAGAAGATGCCCTTTTCAAAGATCTTGTTGATTTTGCAAAATCCAAAACCTCATCTTCTTCCAAACCCAATAGGTCATATTAA 1548 0.4425 MANNAAACAERATSDMLIGPDWAINIELCDIINMDPGQAKDALKILKKRLGSKNPKIQLLALFVLETLSKNCGESVFQQIVERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPTGVYPQYYSAYNELKSAGVEFPPRDENSVPFFTPPQTQPIVHSAAEFEDATIQASLQSDASDLSLLEIQNAQGLADVLMEMLSALNPKDPEGVKEEVIVDLVDQCRSYQKRVMLLVNNTTDEQLLGQGLTLNDSLQRVLSRHDDIVKGNSDSGAREAETPVLPLVNVNPEDDESEDDFAQLAHRSSRDTLAQNRKPAYDKAEPGRINPLIPPPPASRKPVYSGTGMVDYLSGDAYKAEGSSENSEPPSFAGPLHSSPNPTSSTVPSQSSSRPPAVNTSSPIFSSQPVYDEQPSSVDKSSEHLPPAPWDSQSPGPGIIPPPPSKYNQRQQFFEQQGTSHSSSGSSSSYDSLVGQTQNLSLNSSTPTKQQKPEDALFKDLVDFAKSKTSSSSKPNRSY 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01065 515 Pfam GAT domain 193 267 IPR004152 GO:0035091|GO:0043130
Cca03g01065 515 PANTHER TOM1-LIKE PROTEIN 4 1 514 - -
Cca03g01065 515 SUPERFAMILY GAT-like domain 140 268 - -
Cca03g01065 515 MobiDBLite consensus disorder prediction 355 493 - -
Cca03g01065 515 Gene3D - 2 158 IPR008942 -
Cca03g01065 515 CDD VHS 10 135 - -
Cca03g01065 515 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Cca03g01065 515 PIRSF TOM1 1 514 IPR014645 -
Cca03g01065 515 SUPERFAMILY ENTH/VHS domain 8 142 IPR008942 -
Cca03g01065 515 MobiDBLite consensus disorder prediction 426 440 - -
Cca03g01065 515 MobiDBLite consensus disorder prediction 356 412 - -
Cca03g01065 515 MobiDBLite consensus disorder prediction 296 320 - -
Cca03g01065 515 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
Cca03g01065 515 Pfam VHS domain 9 134 IPR002014 GO:0035091|GO:0043130
Cca03g01065 515 MobiDBLite consensus disorder prediction 441 488 - -
Cca03g01065 515 CDD GAT_GGA_like_plant 186 264 - -
Cca03g01065 515 PANTHER TOM1-LIKE PROTEIN 1 514 IPR044836 GO:0035091|GO:0043130|GO:0043328
Cca03g01065 515 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Cca03g01065 515 MobiDBLite consensus disorder prediction 265 343 - -
Cca03g01065 515 Gene3D - 175 274 IPR038425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01065 Cca-Chr3 25862827 25869655 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01065 - - gmx:100792343 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01065 03 25862827 25869655 Cca03g01065 03 25862827 25869655 ECH
Cca05g00678 05 17243824 17261383 Cca03g01065 03 25862827 25869655 PCT