LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca05g00674	ATGAGAAAGCATCTTAATCTGGGGGATGATAAATCAGCCGAGGTGACTGAAGAAACTGTAAAAGCTGTTGCTCAAGCTTTGAGAAATTCGGCTTCGCTCAGAGTCTCAGAAGATGGGAGCAAAGTTGGCAGGGCTACTGAACTTCTGAAGCCAGAAGAGGTAATTGAGCAGGTAGAGATAAGAACAATTGCTGCATCACCATTTGAATACAATGTGAAGCTTGAAGATGTGGAGACATTCTTTGGTCAATATACCAAGGTTAACAGTATTCGGTTGCCTCGCCATGTTGGGGACAAAAGGTTCTTTTGTGGCACCGCCCTTATTGAGTTCTCATCTGATGAAGAAATGGAAAAATTTCTGAAGCAAAGTCTGGTCTATGCGGGGGCTGAGCTAGAATTAAAGCCAAAAAAGGAGTTTGATGCACAGAGAGAAAAAGAATTAGAAGCGCATGAAAAATTTCGTCTACCTGTGGATTCAGATCAGCAGAATAACACTAATGCAGAAGCAAACTACCCAAAAGGCGTACTTATAGCCTTCAAACTAAAGAGTATTGCTGATGAAGTTCCTTCGGAGCAAAATAACACTGATCAACAAGCCAATGACAGTGATGTCTCCAAAACAGATCAACAAAATCCATCTGAAATTGCTGCCAAGGAAAGTGATCAAAAGATATCAGAAAATATTGACAATGATAAAGAAAACAAAGGGGTGAGTGAAGGAAAGCAGACTGAAGGTGAAGAAAAGAGCAAAGAAACTGATGGAAAAAAATCTGCTGCTGCTGACAAAGACAACAAGGATGTTGTGTCACGTGAGGATTTGAAGGTTGTCTTTGAGAAGTTTGGTACTGTGAAGTACATTGATTTCAGTATTGGAGACGAGTCTGGATACATTCGGTTTGAAGAACCTGAAGCTGCTCAGAAAGCTCGTGCTGCTGCTGTTCTTTCTGAAAAGGAGGGCTTAGTTGTGAAGAATTATATTGCTACACTAGATCCAGTGACTGGTGAGGCTGAGAGAGAATACTGGAGCCTGCTTCGTGGTAATCAAGGAAAGCTCCGAGGATGTACAAATAACCGAGGAAGGGGAGGGAAGCATGGTAGAGGGGGCAGAAACACCAGGTCCAGAGAGAATGACTCTGCAGCAGGTCGCCCAAATAAAGTTAGGAAGTCATAA	1170	0.4239	MRKHLNLGDDKSAEVTEETVKAVAQALRNSASLRVSEDGSKVGRATELLKPEEVIEQVEIRTIAASPFEYNVKLEDVETFFGQYTKVNSIRLPRHVGDKRFFCGTALIEFSSDEEMEKFLKQSLVYAGAELELKPKKEFDAQREKELEAHEKFRLPVDSDQQNNTNAEANYPKGVLIAFKLKSIADEVPSEQNNTDQQANDSDVSKTDQQNPSEIAAKESDQKISENIDNDKENKGVSEGKQTEGEEKSKETDGKKSAAADKDNKDVVSREDLKVVFEKFGTVKYIDFSIGDESGYIRFEEPEAAQKARAAAVLSEKEGLVVKNYIATLDPVTGEAEREYWSLLRGNQGKLRGCTNNRGRGGKHGRGGRNTRSRENDSAAGRPNKVRKS	389

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca05g00674	389	SUPERFAMILY	RNA-binding domain, RBD	53	137	IPR035979	GO:0003676
	Cca05g00674	389	MobiDBLite	consensus disorder prediction	188	218	-	-
	Cca05g00674	389	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	61	146	IPR000504	GO:0003723
	Cca05g00674	389	Gene3D	-	239	360	IPR012677	-
	Cca05g00674	389	Pfam	RNA binding motif	266	360	IPR014886	GO:0003723
	Cca05g00674	389	SUPERFAMILY	RNA-binding domain, RBD	268	359	IPR035979	GO:0003676
	Cca05g00674	389	ProSiteProfiles	xRRM domain profile.	250	377	IPR014886	GO:0003723
	Cca05g00674	389	MobiDBLite	consensus disorder prediction	349	389	-	-
	Cca05g00674	389	SMART	rrm1_1	265	323	IPR000504	GO:0003723
	Cca05g00674	389	SMART	rrm1_1	62	134	IPR000504	GO:0003723
	Cca05g00674	389	PANTHER	LUPUS LA PROTEIN-RELATED	1	388	IPR045180	-
	Cca05g00674	389	PANTHER	BNAANNG34180D PROTEIN	1	388	-	-
	Cca05g00674	389	MobiDBLite	consensus disorder prediction	188	264	-	-
	Cca05g00674	389	MobiDBLite	consensus disorder prediction	368	389	-	-
	Cca05g00674	389	Gene3D	-	54	153	IPR012677	-
	Cca05g00674	389	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	69	121	IPR000504	GO:0003723
	Cca05g00674	389	MobiDBLite	consensus disorder prediction	150	169	-	-
	Cca05g00674	389	MobiDBLite	consensus disorder prediction	219	264	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca05g00674	Cca-Chr5	17065365	17070175	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca05g00674	K11090		-	gmx:100792984	530.791

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca05g00674	05	17065365	17070175	Cca05g00674	05	17065365	17070175	ECH
	Cca05g00674	05	17065365	17070175	Cca03g01440	03	32811686	32815792	PCT