Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01440 ATGGCAACGCAATCGTTAGACGAAGAAACAACCAAGAAAGTTATACGACAAGTGGAATTTTATTTCAGCGACAGCAACCTTCTCACCGATGGTTTTATGAGGAAGAATATCACCGAAAGCGAAGATGGCATGATTAGTTTGGCTCTGATTTGCTCTTTTAATCGAATGCGAATGCACCTTAAGTTGGGTGATGTAAAGCCTGATGATGTGTCTGAAGATACCGTCAATGCTGTTGCTCAGACTTTGAGAAATGCGGCTTCACTCAAGGTCTCTGAAGATGGAAAAAAAGTTGGCAGGATAACTGAACTTCCGAAGCTAGAAGAGGTTGAGCAGGTGGAGATAAGAACACTTGCTGCATCACCATTTGAATATGACCTGAAGCTTGAAGACGTGGAGAAGTTTTTTGGGCAATATGCCAAGGTTAATAGTGTCCGGATTCCCCATCATGTTGGAGACAAAAAGTCCTTCTGTGGCACTGCCCTTGTTGAGTTCTCTTCAGAGGAGGAAGTAGAAAAACTTATGAAGGAAAAATTGGTGTATGCCGGGGCTGAGTTAGAATTAAAACCAAAGAAGGACTTTGATGCTGAGAGAGAAAAAGAATTAGAAGATTATAAAAAATCTCGTCCACCTGTGGGTTCAAATGACCAAAATAACTCACATGTAGAAGAAAACTACCCTAAAGGCTTAATTATTGCCTTCAAACTAAAGAGCATTTCAGATGAAATTCCTTCAGAACAGAATGGTGTTGATCAAGAAGCCAATAACAATAGTGTTGTCTCAAAAGCGGATGAAAAGCCCCCCTCTGAAATTACTTCTTGGGAAGATGACCAAAAGGTAACAGAAAATGTTGACAATGGTGAAGAAAAGAATGGGATGGAAGAAGCAAAGGAAACTGAAAATGAAGAAAACAATGAGATGAAGGAAGCAAAGGAAACTGAGAGTGAAGAAAACAATGAAAATAAGGAAGGAAAGGAAACCAGAAATGAAGAAAACAATGAGATGAAAGGAGGAAAGATAACTGAAGGTGAAGAAAAGAATCGACAAGCTGGTGAAAAATTTTCTGCTGCTGCTTACAAGGACAATATGGATGTTGTCTCGCGTGAGGATTTGAAGGCTGTTTTTGTGGAGTTTGGTACAGTGAAGTACATTGATTTTAGGATTGGAGAAGAGTCAGGATACATCCGATTTGAAGAAACTGAAGCTGCTCAGAAAGCTCGTGCTGCTGCAGTTATTTCAGAAAAGGGCGGCTTGGTTGTAAAGAATTACATTGCTACTCTAGAGCCAGTGACTGGGGAGGCCGAAAAAGAATACTGGGGTCTGCTTCGCGGTAATCAAGGCAAGCACCGAGATTTTAAGAGTAAGCATGGGAGGGGAGGAAGGCATGGTAGAGGGGGCAAACATGGTCGCTCTAGGGAGAATGAATCTAGAGGTGATCGCCCATATAAAGCTCAGAAAGTTGGTGCTGCATAA 1470 0.4136 MATQSLDEETTKKVIRQVEFYFSDSNLLTDGFMRKNITESEDGMISLALICSFNRMRMHLKLGDVKPDDVSEDTVNAVAQTLRNAASLKVSEDGKKVGRITELPKLEEVEQVEIRTLAASPFEYDLKLEDVEKFFGQYAKVNSVRIPHHVGDKKSFCGTALVEFSSEEEVEKLMKEKLVYAGAELELKPKKDFDAEREKELEDYKKSRPPVGSNDQNNSHVEENYPKGLIIAFKLKSISDEIPSEQNGVDQEANNNSVVSKADEKPPSEITSWEDDQKVTENVDNGEEKNGMEEAKETENEENNEMKEAKETESEENNENKEGKETRNEENNEMKGGKITEGEEKNRQAGEKFSAAAYKDNMDVVSREDLKAVFVEFGTVKYIDFRIGEESGYIRFEETEAAQKARAAAVISEKGGLVVKNYIATLEPVTGEAEKEYWGLLRGNQGKHRDFKSKHGRGGRHGRGGKHGRSRENESRGDRPYKAQKVGAA 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01440 489 MobiDBLite consensus disorder prediction 244 348 - -
Cca03g01440 489 Gene3D - 352 457 IPR012677 -
Cca03g01440 489 MobiDBLite consensus disorder prediction 267 348 - -
Cca03g01440 489 MobiDBLite consensus disorder prediction 448 466 - -
Cca03g01440 489 CDD LA_like_plant 10 99 - -
Cca03g01440 489 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Cca03g01440 489 Gene3D - 6 107 IPR036388 -
Cca03g01440 489 Coils Coil 289 329 - -
Cca03g01440 489 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cca03g01440 489 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cca03g01440 489 PRINTS Lupus La protein signature 156 174 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cca03g01440 489 PANTHER LUPUS LA PROTEIN-RELATED 2 293 IPR045180 -
Cca03g01440 489 PANTHER LUPUS LA PROTEIN-RELATED 323 488 IPR045180 -
Cca03g01440 489 MobiDBLite consensus disorder prediction 467 481 - -
Cca03g01440 489 MobiDBLite consensus disorder prediction 244 262 - -
Cca03g01440 489 Pfam RNA binding motif 365 457 IPR014886 GO:0003723
Cca03g01440 489 SMART rrm1_1 116 188 IPR000504 GO:0003723
Cca03g01440 489 SMART rrm1_1 356 420 IPR000504 GO:0003723
Cca03g01440 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 175 IPR000504 GO:0003723
Cca03g01440 489 MobiDBLite consensus disorder prediction 447 489 - -
Cca03g01440 489 SUPERFAMILY RNA-binding domain, RBD 108 191 IPR035979 GO:0003676
Cca03g01440 489 SUPERFAMILY "Winged helix" DNA-binding domain 6 106 IPR036390 -
Cca03g01440 489 PANTHER BNAANNG34180D PROTEIN 323 488 - -
Cca03g01440 489 PANTHER BNAANNG34180D PROTEIN 2 293 - -
Cca03g01440 489 SMART la 8 100 IPR006630 -
Cca03g01440 489 ProSiteProfiles xRRM domain profile. 344 474 IPR014886 GO:0003723
Cca03g01440 489 Gene3D - 108 206 IPR012677 -
Cca03g01440 489 MobiDBLite consensus disorder prediction 198 223 - -
Cca03g01440 489 Pfam La domain 14 84 IPR006630 -
Cca03g01440 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 200 IPR000504 GO:0003723
Cca03g01440 489 SUPERFAMILY RNA-binding domain, RBD 365 450 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01440 Cca-Chr3 32811686 32815792 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01440 K11090 - gmx:100803099 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01440 03 32811686 32815792 Cca03g01440 03 32811686 32815792 ECH
Cca05g00674 05 17065365 17070175 Cca03g01440 03 32811686 32815792 PCT