Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00652 ATGGCTGAACCAAAAGAGGACACAGAATGCGAATTCACGTGGGGGAGAAAGCGAGGCATGGGTGGGAAGAAGAGAGACATTCAGTTCTACTCTTCGTTCACCTTCGACGGCGAGGAGTACGCGCTCAACGACGTCGTTTTTCTACAAAATGGGAGTGGTGGCGAGCCCCACATCGGAAAGCTCATAAAGATCTGGGAGAACCGCGACAAGTCAAGGAAGGTGAAGGTGCAGTGGTTCTTCCGTTCCAGTGAGATTCAGAAGTACTTGGAAGGGATTGTGACCAAGGAGAACGAGATTTTCTTGGCGTGTGGCGATGGCAAGGGCTTTGCCAATGTTAATCCTCTTGAAGCTATTGTTGGGAAATGCAATGTTGTTTGCATTTCTAAGGACATTGAGAAACCACAATCGTCAGATGAAGCACCAGCTGATTTTGTGTTCCATCGTTCCTTTGATGTTGCGAAATTGAAAGTTGTGGATCAGATAGATGACAAGACTTCTGAAACTGAAGTTAAAAATGATTGA 522 0.4617 MAEPKEDTECEFTWGRKRGMGGKKRDIQFYSSFTFDGEEYALNDVVFLQNGSGGEPHIGKLIKIWENRDKSRKVKVQWFFRSSEIQKYLEGIVTKENEIFLACGDGKGFANVNPLEAIVGKCNVVCISKDIEKPQSSDEAPADFVFHRSFDVAKLKVVDQIDDKTSETEVKND 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00652 173 Gene3D - 7 160 IPR043151 -
Cca05g00652 173 PANTHER PROTEIN ANTI-SILENCING 1 1 171 - -
Cca05g00652 173 SMART BAH_4 38 162 IPR001025 GO:0003682
Cca05g00652 173 Pfam BAH domain 38 151 IPR001025 GO:0003682
Cca05g00652 173 PANTHER PROTEIN ANTI-SILENCING 1 1 171 - -
Cca05g00652 173 ProSiteProfiles BAH domain profile. 38 161 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00652 Cca-Chr5 15919239 15921570 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00652 - - vun:114193424 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00652 05 15919239 15921570 Cca05g00652 05 15919239 15921570 ECH
Cca03g01450 03 32965263 32992445 Cca05g00652 05 15919239 15921570 ECH