Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01450 ATGCATTATGGGTTAATGGCATCAGTTTGTCAGCTATATATGGGATACGATACGATTATGGCAGAAGCAGGGGAGGAGGGGGAGGTTATTGAATTCAAGTGGGGCAAAAGGAGAGGGGTTGGTGGTAAAAAGAAGGATGTGCAATTTTACGAATCGTTTTCCTACGACGGGGTGGAATACTCCCTCTATGACTCTGTGTTTCTCTACAAGGAAGGTGAACCCGAGCATTTCATTGGTAAAATCGTTAAAATATGGGAGGCCGCTGATAAGAGCAAGAAAGTTAAGATTCTGTGGTATTTTCGACCTAGTGAGATTCTGAACTTCTTGGAAGGAAGCGAGACGCTTCACAATGAGTTGTTTTTGGCATCTGGTGAAGGGGAAGGGCTTGTAAACGTCAATCCTCTGGAAGCAATTGCTGGAAAATGCAATATCGTTTGCATTTCGAAGGACAATAGGAATCCTTATCCATCTGATGAAGAAGTTCAAATTGCTGAATTTGTATTCTATCGTTTCTTTGATGTTGGGAAGCGTAAAATAGTGGACAAGATAGATGATAATATTGCTGGAATTGAAGTTAAAAATATTTTTAACAATTTAGATAGTCAAAAGGTTGTTGGTCTTGTGAAACCTGGTTTAGACAAGAAAGAAGTTAATGGGAACTTCATTGCAAGTAATGCAGCGGTGGCTCTTTCGAGTCAAAAAAAGAGTCAGCCTTTGATTGAAAAACCAGATGGCAAGTGTTTTGACACGTTAGTTAGAGAAAATGCTGATTCTAAGTCATTGTTGCGAAAAAAACCTACTAGTAGCACTGGTGTAAAGGATGCAAGTAAACCTACTGATTCTTTGCACACTATTTCCAACAACAAGACCATGCCTCAAGCTAAAGTTGAAGAAAATGGGAGTTTTAAGGTTTCTTTGGATAAACAAAAATCATCTAATAAACTATCACATGGTTCTAGAGCTGGTTTGGAAATGAGGGAAATAACTAAAATGGATGATGGGTGTGGAAATGTCTCTATTGAGAAGAAGATTGTGATGTCTAGAGTTGATTTAGAAGGGGATGATTGTGATGATGTTGGTGGCCCCGTTGGAAAAATTAACAAGGGATCGACAGAGGAAGAAGCTTCCAAGAAGGGGAAACATGGCAGTTTTGGTAAGGCTTCTAGTGCAAAGATGAATAATAAAGGGCAAAATCGAAGGCTTATTTCCTatgacgacgatgatgacgatgatgTCAAGACTATAGCTCCATCTTCATCAAAGGATAAATATAAACATCAAAGAGATTATGGTGATGTGGAGGAACTCCCTTCCAAGAAGTTAAAGATTGACAAGAAGCCAATGAAACTCACCAGTGACAAGTTGCGCAAAGAATCTTCAATGATTTCACCAAATGTGGAACACAAGCTAGATTTTCGTCCAATGGAAGTTACTCAAAGACCAGATGTTGATAGAAGCAAATGGTTTAAGGAAATTCCTTGGGAAGAAAAAATGGAAACTGCACATGAGCAAGGAAAACTTGTGCTACTTCAAAACTTGGACCCGTCTTTATCTTCATCAGATGTACAGAATATTATTTGGACTGGCTTTAAAGAAAGTTGCACTGCAAAGATGATCCAGAAAACTGCACACTCTAGCCCTCATTCTGGTCAAGCTGTTGTTATATTTAGAAAAAAGGAAGCAGCAGAGTCAGTTGTTAGAAAATTAGACGAGGGCTGTTTCTTAATGTCAAATGGGCGACCCCTTGTTGGAAGCATTGGCGTTCCTTCTTTTCCAGAAAAGAAGCCAATATTTTATGGTCATCATGTTGTTGATCAACTACGAATGATGCAAACGCAACGAGAGATGAAAGATGCTGTATCTACTTCACATTGTTCTCAGCCCAACAATATAGAATATGAGATGGCCATAGAGTGGTGCTTACTACAAGAAAGAGCAAGCAAATCGTGGAGAAAGTTGTATCAGAGACAAGGCGAGGAGTTGAGtaaactcaaagctaagctgaaATACAACCCCCCCCCGCCCGCGGCAGCCCCCCCGCCGCCGCCGCCGCCGCCCATTGACGACCACCTCCCTCCGCCGCCCCCTCCTCTCCCGGAGTTCTCCCCCGCCTCCCTCACCCGCGCCGCCACCATGCCCGCCGTCTCCATGCACCACCGCAGCCCCGTCCCCCTCTCCATCGCCgaggaggaggaggaggaggaggaCCCCCAAACCCCCGCGCCGCCCAAGAAAACCGCCGCTTCCCCGGCGGAGATTAAGACGCCGCCGCCCCCCATGCCGGAGCCCAAGGGCATGGCTTGGGATTACTTCTTCATGGTGGAGAACATGCCTGGCCCCTCTCTCAGTGCTGAAGATGACATTCTtagtaatgataataacatcaatgatgatgacaataatgatgatgataagcatattcataatgatgagggtaaagtggagaatgtggttgaagatgaggctgaGCCTAAGACACCGGAGAAGGTGGTGCAGCAGCATCACAATGATGAGGAGAATGAGATGAGTGAGGCTAAGAAACACATGGAGCATTCCAAAACTGCTCCACCTGAGTTGAGAAGAGCCATCAAGGTGGTTCCTTCCGTTACTCTCATGCAGATTCTCAGTGTCCTTGATGATCACTTCTTGCAGGCTTCTGAAAGTGCTCAGGGAGTTTCCAAGTTGCTTGAGGCTACTAGGTTGCATTATCATTCCAATTTTGCCGATAATCGGGGGCACATTGATCATTCTGCTAGGGTTATGAGGGTCATAACGTGGAATAAGTCCTTCAGAGGTGTGTCCAATGGGGATGCTGCAAAGGATGATTTTGATTCTGAGGAGTATGAAACTCATGCCACTGTTTTGGATAAGTTGTTGGCCTGGGAAAAGAAGCTTTATGAAGAGGTCAAGCAAGGTGAGCTTATGAAATTTGAGTATCAGAGAAAAGTGGCAATTCTAAACAAGCAGAAGAAGCGTGGGGCCAGTGTTGAATCCTTGGAAAAGACTAAAGCGGCTGTTAGTCATTTGCATACAAGATATATTGTTGACATGCAGTCTATGGATTCGACGGTTTCCGAAGTGAACCATATTCGAGATGCCCAGTTGTATCCAAAACTTGTTTCTCTTGTCGTGGAGATGGCAAATATGTGGGAAAAGATGTGTATGAATCATGACAGCCAGCTGAAAATAGTTACAGACCTCAAATCTCTTGATATTTCTCAGGCTCCTATGGAAACAACCAAGCATCATTACGAACGCACTGTGCAACTTTTGAACGTTGTCCATGAATGGCATTTACAATTTGAGAAGCTTGTGACTCAACAGAAACAATACATCAAAGCTCTTAATAGCTGGCTAAAGTTAAATCTCATTCCTATTGAAAGCAACCTAAAAGAGAAAATCTCATCCCCCCCAAAAGCCCAGAATCCACCAATCCAAGCCCTTCTCCATGCGTGGCATGATTATGTTGACAAGCTTCCTGATGAGCTTGCCAAATCTGCTATTTCCTCTTTTGCTGCCGTGATAAAGACAATCATAGTTCAGCAGGAGGAAGAGATGAAGTTAAAGGAGAGATGTGAGGAAACTAGAAAGGAATACTTTAAGAAAAAACAAGCATTTGAGGAATGGTACCAGAAGCATTTACAGCGAAAGGGACCTGAAGAAGCTGAACATGAAAGAGGAGACGAAGTAAACACAAACAATCCTGTCTCAGAGAGGCAGTTTGTTGTTGAGAGCTTGAAGAAGAGATTAGAAGAGGAAGTTGAATCTCACCAAAAACATTGTGTCCAGGTGCGAGAGAAATCTCTACAGAGTTTCAAAACTCGCTTGCCCGAACTCTTCCGTGCTTTGTCCGACTATGCTCATGCCTGTGCTGATGCTTATGAGAAACTGAAGTCAATCACACAGTCACAAGGTGTTGGGGCATGA 3927 0.4166 MHYGLMASVCQLYMGYDTIMAEAGEEGEVIEFKWGKRRGVGGKKKDVQFYESFSYDGVEYSLYDSVFLYKEGEPEHFIGKIVKIWEAADKSKKVKILWYFRPSEILNFLEGSETLHNELFLASGEGEGLVNVNPLEAIAGKCNIVCISKDNRNPYPSDEEVQIAEFVFYRFFDVGKRKIVDKIDDNIAGIEVKNIFNNLDSQKVVGLVKPGLDKKEVNGNFIASNAAVALSSQKKSQPLIEKPDGKCFDTLVRENADSKSLLRKKPTSSTGVKDASKPTDSLHTISNNKTMPQAKVEENGSFKVSLDKQKSSNKLSHGSRAGLEMREITKMDDGCGNVSIEKKIVMSRVDLEGDDCDDVGGPVGKINKGSTEEEASKKGKHGSFGKASSAKMNNKGQNRRLISYDDDDDDDVKTIAPSSSKDKYKHQRDYGDVEELPSKKLKIDKKPMKLTSDKLRKESSMISPNVEHKLDFRPMEVTQRPDVDRSKWFKEIPWEEKMETAHEQGKLVLLQNLDPSLSSSDVQNIIWTGFKESCTAKMIQKTAHSSPHSGQAVVIFRKKEAAESVVRKLDEGCFLMSNGRPLVGSIGVPSFPEKKPIFYGHHVVDQLRMMQTQREMKDAVSTSHCSQPNNIEYEMAIEWCLLQERASKSWRKLYQRQGEELSKLKAKLKYNPPPPAAAPPPPPPPPIDDHLPPPPPPLPEFSPASLTRAATMPAVSMHHRSPVPLSIAEEEEEEEDPQTPAPPKKTAASPAEIKTPPPPMPEPKGMAWDYFFMVENMPGPSLSAEDDILSNDNNINDDDNNDDDKHIHNDEGKVENVVEDEAEPKTPEKVVQQHHNDEENEMSEAKKHMEHSKTAPPELRRAIKVVPSVTLMQILSVLDDHFLQASESAQGVSKLLEATRLHYHSNFADNRGHIDHSARVMRVITWNKSFRGVSNGDAAKDDFDSEEYETHATVLDKLLAWEKKLYEEVKQGELMKFEYQRKVAILNKQKKRGASVESLEKTKAAVSHLHTRYIVDMQSMDSTVSEVNHIRDAQLYPKLVSLVVEMANMWEKMCMNHDSQLKIVTDLKSLDISQAPMETTKHHYERTVQLLNVVHEWHLQFEKLVTQQKQYIKALNSWLKLNLIPIESNLKEKISSPPKAQNPPIQALLHAWHDYVDKLPDELAKSAISSFAAVIKTIIVQQEEEMKLKERCEETRKEYFKKKQAFEEWYQKHLQRKGPEEAEHERGDEVNTNNPVSERQFVVESLKKRLEEEVESHQKHCVQVREKSLQSFKTRLPELFRALSDYAHACADAYEKLKSITQSQGVGA 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01450 1308 CDD RRM_SF 508 582 - -
Cca03g01450 1308 MobiDBLite consensus disorder prediction 668 704 - -
Cca03g01450 1308 MobiDBLite consensus disorder prediction 400 437 - -
Cca03g01450 1308 MobiDBLite consensus disorder prediction 728 762 - -
Cca03g01450 1308 Coils Coil 1178 1198 - -
Cca03g01450 1308 MobiDBLite consensus disorder prediction 356 437 - -
Cca03g01450 1308 ProSiteProfiles BAH domain profile. 58 183 IPR001025 GO:0003682
Cca03g01450 1308 PANTHER DNA LIGASE (DUF630 AND DUF632) 662 1306 - -
Cca03g01450 1308 MobiDBLite consensus disorder prediction 262 295 - -
Cca03g01450 1308 Pfam Protein of unknown function (DUF632) 871 1176 IPR006867 -
Cca03g01450 1308 MobiDBLite consensus disorder prediction 1213 1234 - -
Cca03g01450 1308 SMART BAH_4 58 184 IPR001025 GO:0003682
Cca03g01450 1308 Gene3D - 28 181 IPR043151 -
Cca03g01450 1308 MobiDBLite consensus disorder prediction 672 702 - -
Cca03g01450 1308 MobiDBLite consensus disorder prediction 1213 1232 - -
Cca03g01450 1308 MobiDBLite consensus disorder prediction 799 855 - -
Cca03g01450 1308 Pfam BAH domain 60 148 IPR001025 GO:0003682
Cca03g01450 1308 MobiDBLite consensus disorder prediction 259 322 - -
Cca03g01450 1308 PANTHER UNCHARACTERIZED 662 1306 - -
Cca03g01450 1308 Coils Coil 1247 1267 - -
Cca03g01450 1308 MobiDBLite consensus disorder prediction 782 855 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01450 Cca-Chr3 32965263 32992445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01450 882 1198 Acyl Lipid Metabolism Gene Families AT2G27090 25.978 1.11e-31 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01450 - - gmx:100807189 1013.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01450 03 32965263 32992445 Cca03g01450 03 32965263 32992445 ECH
Cca03g01450 03 32965263 32992445 Cca05g00652 05 15919239 15921570 ECH