Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00606 ATGGACTCCGTCTTCGCGAGCTCGTCGTGCACGGTTCCTCACCTTCTCCGTCGCGAGGCACCGTTGCTGCTGCCGCGAGCCTCGCTCCGGCGACCGAAGAAGGCGCCGCGGGCTCGGGTTTCGAGTTCCGCCGCGACGGGAAGCGGTGCCCGTGCTGCTGCCTCGAACGGCGCCGTTTCGAGGGCGTTGCAGGGCTCTGCGCTGGAGCAGCTCGACATCGAGCGCGGCGTATGCATCCCTTTCCGCAAGTACTCGCCCGAGATCGTGAGGAGTAAGGTATTAGAATCAAGAGGGTCCACTTTTTCACTTATGTTGCGGGGAGTGGAGATAGTTTGGAATCTGGGCTTGTACTGGTCTAACTTGGTGTATGATTTCCTGGTTGGAAGGGATGAAGAGGTTGTTCCGTATCGTGCTCGTCAGCTTAGGAACCTCTTGTGTGACCTGGGTCCTTCCTTTATTAAAGCTGGTCAGGTCCTTGCAAACAGACCAGATATCATTCGAGAAGATTATATGAATGAACTTTGCATTCTTCAAGATGATGTTCCTTCATTTCCTAATCAAATTGCCTTCAGAATCATAGAAGAGGAATTGGGTCAGCCCCTTGAAGCTGTTTTCAGCAGAATCTCGTCTGGGACAATAGCAGCTGCAAGTTTAGGTCAAGTTTACCGAGCTACTTTACGTGCTACTGGCGAGGATGTTGCAATCAAGGTTCAGAGGCCTGGGATAGAGCCCATTATATATCGAGATCTTTTCCTATTCCGCACTTTGGCTTCATTCTTAAATGGAATTAGTATGCAGAAACTGGGATGTAATGCTGAGCTGATTGTTGATGAATTTGGTGAAAAGCTTTTGGAAGAGCTTGATTATACCCTGGAAGCCCGCAATCTTGAAGACTTTCTTGAGAATTTTAAAAATGACCCTACTGTCAAAATTCCTCAGGTTTACAAACAATTTTCTGGTTCACGTGTGCTAGTTATGGAATGGATCGATGGTATCAGGTGCACCAATCCACAGGCCATCAAAGAAGCTGGTCTCGATGTAGATGGATTTTTAACAATTGGAGTGAGTGCTGCCCTACGACAATTGTTGGAATTTGGATTGTTTCATGGAGACCCTCACCCCGGAAACATTTTTGCTATGCGTGATGGGCGAATTGCATATGTGGACTTTGGCAATGTTGCTGTTCTCAGTCAGCAAAATAAACAAATTTTAATCGATGCTGTTGTCCATGCTGTGAACGAGGACTATGCTGAGATGGCTAATGATTTCACTAGATTAGGTTTTCTGACACCAGGGACTGATGTCACTCCTATAATTCCTGCTTTGGAAGCAATTTGGCAGAATTCTGCTGGAAAAGGACTGTCAGATTTTAACTTTCGTAGTGTCACTGGGAAGTTTAACCAGTTGGTTTACAATTATCCCATTCGAATCCCAGAAAGATTTTCACTTGTAATCCGTTCTTTATTGACCCAAGAAGGCATCTGTTTTACCCTGAAGCCTGACTTCAAATTTCTTGAGGTTGCCTATCCTTATGTGGCTAAGCGACTACTAACAGACCCAAATCCAGCTCTACGTGAACGCCTCATACAGGTTCTATTTAAAGATGGTCTTTTCCAATGGAAACGGCTTGAAAATCTTATTGTTCTTGCGAAGGAAAATGTGGCAAAGATGAGCAGCAATCCAGCATTGAAAGTGAAAAACACGCAAAACCAGAGAGACTGGAAAGTTGAAAGAAAATTGGACCTCACAGACACAATCAAAGATGGAGCTCGCCTTTTCTTTGTTGACGAAGCAATACGTAGACAGCTTCTTCTTGCTTTGACTGAGGACTCAAAACTTCATATTGAAGAGCTTGTTGATGTGTATAGGTTGGTTGAAGATCAGATAGACATACCTTCAGTGGCTGTAGAAGTAGCTAGAGATTTACCCACAGTTGTCAGGGATCTCCTACTTTCATGGAGTGAGTCTGTCTTGTCGGATAGATAG 1986 0.4542 MDSVFASSSCTVPHLLRREAPLLLPRASLRRPKKAPRARVSSSAATGSGARAAASNGAVSRALQGSALEQLDIERGVCIPFRKYSPEIVRSKVLESRGSTFSLMLRGVEIVWNLGLYWSNLVYDFLVGRDEEVVPYRARQLRNLLCDLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPSFPNQIAFRIIEEELGQPLEAVFSRISSGTIAAASLGQVYRATLRATGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISMQKLGCNAELIVDEFGEKLLEELDYTLEARNLEDFLENFKNDPTVKIPQVYKQFSGSRVLVMEWIDGIRCTNPQAIKEAGLDVDGFLTIGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLTPGTDVTPIIPALEAIWQNSAGKGLSDFNFRSVTGKFNQLVYNYPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKDGLFQWKRLENLIVLAKENVAKMSSNPALKVKNTQNQRDWKVERKLDLTDTIKDGARLFFVDEAIRRQLLLALTEDSKLHIEELVDVYRLVEDQIDIPSVAVEVARDLPTVVRDLLLSWSESVLSDR 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00606 661 SUPERFAMILY Protein kinase-like (PK-like) 178 416 IPR011009 -
Cca05g00606 661 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 33 661 - -
Cca05g00606 661 Pfam ABC1 atypical kinase-like domain 177 421 IPR004147 -
Cca05g00606 661 PANTHER PROTEIN ACTIVITY OF BC1 COMPLEX KINASE 1, CHLOROPLASTIC 33 661 - -
Cca05g00606 661 CDD ABC1_ADCK3-like 177 423 - -
Cca05g00606 661 ProSiteProfiles Protein kinase domain profile. 207 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00606 661 Gene3D Transferase(Phosphotransferase) domain 1 208 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00606 Cca-Chr5 13886584 13896941 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00606 - - gmx:100819754 1184.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00606 05 13886584 13896941 Cca05g00606 05 13886584 13896941 ECH
Cca03g00096 03 1364544 1384849 Cca05g00606 05 13886584 13896941 PCT