Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00565 ATGCTCAAGCAAATCCTCAGCAAGCTTCCTCGGAAGTCGTTGAAACCCGACTCGGACGAGTCGACTCGGTGTGACTCGGCCCGTTCCGCTGATTCGCCGCGCGCCGCCGGAAGATGCCACAGGCCGCACAGCGGCGGAACATCCGGAGCGAAGCGGGCTTCGTCGTCGGCGGTGTTTCCGGCGAGCATGGTGTCCGGAATTGAACCCTTGGTGCCGTTTAAGGATGTTCCTAATGGTGAGAAGATGAACCTGTTTGTGAGCAAATTGAGCCTTTGTTGTGTCACATTTGATTTCACTGACCCTGGTAAGAGCATTGCAGATAAAGATGTTAAAAGGAAGACTTTGGTTGAGCTTGTTGATTTTGTGGCTTGTGGGTCAATGACGTTTAGTGAGCCTGCTATTCTTGCCATGTGTAGAATGTGTGCTATTAATTTGTTTAGAGTTTTCCCTCCTAATTATAGGGCAAGTGGTGGTGGTGAGAATGATGATGATGAACCTATGTTTGATCCTGCTTGGCCACATTTGCAACTTGTGTTTGAATTGCTGCTTAAGTTTATCTCTTCTCCGCGCCTCGATGCCAGGGTGGCAAAAAAGTATATTGATCATTCGTTTATTGCCAGATTGCTTGAATTGTTTGATTCGGAGGATCCTAGGGAGAGAGATTGCTTGAAGACGATTCTACATAGGATTTATGGGAAGTTCATGGTGCATAGACCCTATATTCGGAAATCTATTAACAATATATTTTATCGGTTTGTGTTCGAGACCGAGAAGCACAATGGTATTGGTGAGTTGTTGGAGATTTTTGGGAGCGTGATTACCGGGTTCGCTTTGCCCTTGAAAGAGGAACACAAAATCTTCTTGTGGAGGGTTTTGATCCCCTTGCACAAGCCAAAATCTATTGGGGTCTACTTTCAGCAATTGTCCTACTGTGTTATGCAGTTTATAGAGAAGGAGCCAAAGTTAGCGAGCATTGTGATAAGGGGCTTGTTGAAATATTGGCCAGCAACTAATAGCCAGAAAGAGGTAATGTTTCTGGGTGAACTGGAAGAAATTTTGGAAGTAATTAACATGGTAGAGTTCCAGAGGATTATGGTCCCATTGTTTTTGCGGATTGGGTGCTGCATTAACAGCCTACACTTTCAGGTAGCTGAAAGGGCCCTTTTCTTATGGAACAATGACCACATTGTCAACTTGATTGCACATAACCGTCAAGTGATCCTGCCTATCATATTTCCAGCTTTAGATAGGAATGTTCAAAGCCATTGGAACCCGGCAGTTATCAACCTAACTCACAATATTAGAAAGATGTTCTTGGAGATGGATGAAAAGCTCTTCATTTCTTGTCATAATCACTTTAAGGAAGAAGAAGCAATCTTGATCTCAGCAGCAGAGAAGCGAAAGGAGGCGTGGAAACAACTTGAACATGCAGCCAGTCTCAGGCCTGTAATTGGGAATACTGCAGTTTTAGTGTCCTGA 1479 0.4456 MLKQILSKLPRKSLKPDSDESTRCDSARSADSPRAAGRCHRPHSGGTSGAKRASSSAVFPASMVSGIEPLVPFKDVPNGEKMNLFVSKLSLCCVTFDFTDPGKSIADKDVKRKTLVELVDFVACGSMTFSEPAILAMCRMCAINLFRVFPPNYRASGGGENDDDEPMFDPAWPHLQLVFELLLKFISSPRLDARVAKKYIDHSFIARLLELFDSEDPRERDCLKTILHRIYGKFMVHRPYIRKSINNIFYRFVFETEKHNGIGELLEIFGSVITGFALPLKEEHKIFLWRVLIPLHKPKSIGVYFQQLSYCVMQFIEKEPKLASIVIRGLLKYWPATNSQKEVMFLGELEEILEVINMVEFQRIMVPLFLRIGCCINSLHFQVAERALFLWNNDHIVNLIAHNRQVILPIIFPALDRNVQSHWNPAVINLTHNIRKMFLEMDEKLFISCHNHFKEEEAILISAAEKRKEAWKQLEHAASLRPVIGNTAVLVS 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00565 492 PIRSF PP2A_B56 5 489 IPR002554 GO:0000159|GO:0007165|GO:0019888
Cca05g00565 492 MobiDBLite consensus disorder prediction 10 27 - -
Cca05g00565 492 SUPERFAMILY ARM repeat 83 474 IPR016024 -
Cca05g00565 492 MobiDBLite consensus disorder prediction 1 53 - -
Cca05g00565 492 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 72 478 IPR002554 GO:0000159|GO:0007165|GO:0019888
Cca05g00565 492 Gene3D - 77 477 IPR011989 -
Cca05g00565 492 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 492 - -
Cca05g00565 492 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 492 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00565 Cca-Chr5 13008037 13011706 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00565 K11584 - gmx:100781390 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00565 05 13008037 13011706 Cca03g01520 03 33831903 33835285 PCT