Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01520 ATGCTGAAGCAATTCCTCAGTAAACTCCCTCGCAAGAACTCGAAGCCCGACTCGGACGAGTCATACCGAGGCGACTCGTCGCGCTCGGACGTTTCCCCGCGCAGAAACAGCCGCCAGCACGGCGGCGGGGGCGCCGCCGCCGCGAAACGGACGTCCTCGTCGGCTGTGTTCCCGGCGAGCACGGTGTCGGTGATAGAACCTTTGGTGCCGTTTAAGGATGTTCCGAGCTCGGAGAAGATGACCCTTTTCGTGAGCAAGCTGAGCCTGTGTTGCGTCACGTTCGATTTCACGGACCCTGGTAAGAACACGGTTGAGAAAGAGGTTAAAAGAAGAACCTTGGTGGAACTCGTTGATTTCGTTTCCTCTTGTGGGTCCTCTAGATTCGGTGAAGCTTCTATTCTCGCTCTGTGTAGAATGTGTGCTATTAATCTCTTTCGCGTTTTCCCGCCAAATTATAGGTCCAATCGTGGTGGTGAGAATGATGATGATGAGCCAGCGTTTGATCCCGCTTGGCCTCATTTGCAGCTTGTGTATGAATTGCTGCTCAAGTTTATAACCTCGAATTGCCTTGATGCTAAGGTTGCTAAGAAGTTCATCGACCATTCGTTTATTTTAAGGTTGTTGGAGTTGTTTGATTCGGAGGATCCTAGGGAGAGGGACTGCTTGAAGACCATTCTGCATAGGGTTTATGGCAAGTTCATGGTGCATAGGCCCTACATTAGGAAATCTATTAACAACTTGTTTTATAGGTTTGTGTTTGAGACTGAGAGGCACAACGGGGTGGCGGAGTTGTTGGAGATTTTCGGGAGCATAATTAGCGGTTTTGCTTTGCCTTTGAAGGAGGAGCACAAGATCTTTTTGTGGAGGGTTTTGATCCCCTTGCACAAGCCCAAGTCCATGGGGGTCTACTTCCAGCAGTTGTCTTACTGCGTCACGCAGTTTATCGAGAAAGAGCCTAAGTTGGCCAGCATTGTGATTAGGGGGTTGTTGAAGTATTGGCCGATAACGAATAGTCAGAAAGAGGTGATGTTCCTGGGTGAACTGGAAGAAATTTTGGAAGTTATTAACATGGTAGAGTTCCAGAGGGTCATGGTGCCTTTGTTTTGGCGGATTGGATGCTGCATTAACAGCTTGCACTTTCAGGTGGCTGAAAGAGCCCTTTTCTTATGGAACAACGACCACATTGTCAACTTGATTGCTCACAACCGTCAGGTAATCCTGCCGATCGTATTTCCAGCCTTAGAGAAGAATTCTCAGGGCCACTGGAGCCAGGCAGTGCACAACCTAACTCATAATGTTAGAAAAATGTTTGTGGAGATGGATGAGAAGCTGTTCCTGGCTTGTCATTCTCAGTTCAAGGAAGAAGAAGCGATGCTAAATGCCGGAGCTGAGAAGCGCAAGGAAGCCTGGAAACAACTAGAGCATGCAGCCAGTCTCCAGCCTGTGATTGGAAATACCCCAGTTTTAGTGTCTCCACTTTGA 1482 0.4865 MLKQFLSKLPRKNSKPDSDESYRGDSSRSDVSPRRNSRQHGGGGAAAAKRTSSSAVFPASTVSVIEPLVPFKDVPSSEKMTLFVSKLSLCCVTFDFTDPGKNTVEKEVKRRTLVELVDFVSSCGSSRFGEASILALCRMCAINLFRVFPPNYRSNRGGENDDDEPAFDPAWPHLQLVYELLLKFITSNCLDAKVAKKFIDHSFILRLLELFDSEDPRERDCLKTILHRVYGKFMVHRPYIRKSINNLFYRFVFETERHNGVAELLEIFGSIISGFALPLKEEHKIFLWRVLIPLHKPKSMGVYFQQLSYCVTQFIEKEPKLASIVIRGLLKYWPITNSQKEVMFLGELEEILEVINMVEFQRVMVPLFWRIGCCINSLHFQVAERALFLWNNDHIVNLIAHNRQVILPIVFPALEKNSQGHWSQAVHNLTHNVRKMFVEMDEKLFLACHSQFKEEEAMLNAGAEKRKEAWKQLEHAASLQPVIGNTPVLVSPL 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01520 493 PIRSF PP2A_B56 5 489 IPR002554 GO:0000159|GO:0007165|GO:0019888
Cca03g01520 493 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 70 477 IPR002554 GO:0000159|GO:0007165|GO:0019888
Cca03g01520 493 SUPERFAMILY ARM repeat 82 473 IPR016024 -
Cca03g01520 493 Gene3D - 75 476 IPR011989 -
Cca03g01520 493 MobiDBLite consensus disorder prediction 1 50 - -
Cca03g01520 493 MobiDBLite consensus disorder prediction 10 35 - -
Cca03g01520 493 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 491 - -
Cca03g01520 493 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 491 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01520 Cca-Chr3 33831903 33835285 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01520 K11584 - gmx:100775273 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00565 05 13008037 13011706 Cca03g01520 03 33831903 33835285 PCT