Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00560 ATGGCCACTGCTCTCTCCGAAGCCTATAGAGACCACCCTCTCCACCTTCATCACATCATCCCCTTAGACTTTTCTTCAGTTAGGACCTTACCTGATTCCCATGCATGGCCTCAATCtgaagatgatgatgatgatgataatcatcatcatcatgGAGCTGGATCATGCATACCCATCATTGACCTCATGGACCCAAATGCCATGGAACTCATAGGCCTTGCTTGTGAGCAGTGGGGTGCCTTCCAATTGAAGAACCATGGCATACCCTTGAGTGTTATGGAAGAGGTTGAAGAAGAAACAAAGAGGCTCTTTGCTCTCCCCACCGGCCGGAAAATGAAGGCGCTGAGATCCACCGCCGGCGCAACCGGGTACGGCCGAGCTAGGATATCTCCATTCTTCCCCAAGCACATGTGGCATGAAGGATTCACCATCATGGGGTCTCCATGTGATGATGCCAAAAAGATATGGCCTAATGATCATGCACGGTTTTGCAACACAATGGACAATTATCAAAAGCAAATGAAGGTGCTAGCAGAGAAGCTAACACACATGATATTCACCTTAATGGGGATCTCAGAAGAACAAAAGAGGTGGGTTGGTTCAACCAATAATAACCCTTGTGAAGCTATTCAGCTAAACTTCTACCCTTGTTGTCCTGACCCTAACCGAGCCATGGGTTTAGCCCCTCACACGGACACGTCCCTCTTCACAATCCTCCACCAAAGCCAAACCAATGGCCTCCAAATCTTCAAGGAGGGTGCAGGGTGGGTTCCCGTGCACCCTCACCCCAACACCCTTGTTGTTCACACTGGTGACATTCTCCACATCTTGTCCAACTCGAGGTTTCGTTGTGCCCTACATCGTGTCATGGTGAACAGTGCCAGAAAGAGATACTCCGTGGCTTATTTCTATGGACCACCGTTGGATTATGTTGTTTCACCTTTGGTTCTTGATTCGTTGCCTTGTTTTCGGGCTTTGTCTGTGAAGGAGTATGTTGGCATCAAGGCCAAGAACTTTGGGGGAGCATTGTCTTTGATTAGAACACTTGAAAACTAA 1056 0.4678 MATALSEAYRDHPLHLHHIIPLDFSSVRTLPDSHAWPQSEDDDDDDNHHHHGAGSCIPIIDLMDPNAMELIGLACEQWGAFQLKNHGIPLSVMEEVEEETKRLFALPTGRKMKALRSTAGATGYGRARISPFFPKHMWHEGFTIMGSPCDDAKKIWPNDHARFCNTMDNYQKQMKVLAEKLTHMIFTLMGISEEQKRWVGSTNNNPCEAIQLNFYPCCPDPNRAMGLAPHTDTSLFTILHQSQTNGLQIFKEGAGWVPVHPHPNTLVVHTGDILHILSNSRFRCALHRVMVNSARKRYSVAYFYGPPLDYVVSPLVLDSLPCFRALSVKEYVGIKAKNFGGALSLIRTLEN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00560 351 Pfam non-haem dioxygenase in morphine synthesis N-terminal 57 157 IPR026992 -
Cca05g00560 351 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 206 306 IPR005123 -
Cca05g00560 351 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 12 342 - -
Cca05g00560 351 Pfam 2OG-Fe(II) oxygenase superfamily 208 306 IPR044861 -
Cca05g00560 351 Gene3D - 17 338 IPR027443 -
Cca05g00560 351 SUPERFAMILY Clavaminate synthase-like 17 339 - -
Cca05g00560 351 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 12 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00560 Cca-Chr5 12850527 12853967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00560 57 331 Glycosyltransferase AT5G59530 28.428 4.66e-30 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00560 K04124 - gmx:100808546 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01524 03 33879518 33881450 Cca05g00560 05 12850527 12853967 PCT