Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01524 ATGGAGAGTGCTCTTGGTGAAGCCTACAAAGAACACCCTATCCACCTTGGTCACATTGTCCCCCTAGACTTTTCTTCACTCCCCACCTTACCCGATTCTCACGCATGGTCTCCATCCAACGATGACTATAGTTTCCCATGCAATGATGCATCATCATCCATACCCATCATAGACCTCATGGATCCTAATGCCATGCACCTCATAGGCCATGCATGCGAGACGTGGGGTGCGTTCCAAGTGAAGAACCATGGCATACCCTTTGGTGTCATCGAACGTGTAGAACAAGAGGCCAAACGTCTCTTCTCTCTTCCCACCCAACAGAAGCTCAAGGCTCTTAGATCTCCCGGTGGCGCCACCGGCTACGGCAGAGCTAGGATTTCACAGTTCTTCCACAAGTTCATGTGGCACGAAGGATTCACCATCATTGGTTCTCCATCTCATGATGTTAAAAAGATATGGCCTAATGATTATGCACACTTTTGTGATTTGATGGAGAAGTACGAGAAGGAAATGAAGGTTCTAGCGGAGAGACTAACAAAGATGATGTTAGAGTTGTTGGGAATTAGGGAAGAAAAAAGGAAGTGGGTTGGTTCAAAGAACACAAATGGAGCAGTTCAGTTGAATTTCTACCCAAGTTGTCCAGAGCCAAAGAGAGCAATGGGTCTAGCACCACACACCGACACATCGCTATTCACAATCCTACACCAAACCCAAACCACAGGGCTTGAAATCTTCAAGGAAGGAAAAGGGTGGGTTCCAGTGCACCCCCACCCTAACGCACTGGTCGTCAACACAGGCGATTTCTTCCACATCATGTCCAATGCGAGGTTCCGTTGCGCGCTTCACCGTGTTACTGTGAATAGGACTCGGAAACGTTACTCTGTCGCTTATTTCTATTATCCTCCGATGGATTACGAGGTTTCTCCTTTCGATCTCAACTCTGCTGCTCGTTTTCGTCCTGTCACTGTCAAGGAGTATAATGGGATTAAGGCCAAGAATTTTGGACAAGCACTCTCTTTGATTAGTACTTCAAATTAA 1038 0.4682 MESALGEAYKEHPIHLGHIVPLDFSSLPTLPDSHAWSPSNDDYSFPCNDASSSIPIIDLMDPNAMHLIGHACETWGAFQVKNHGIPFGVIERVEQEAKRLFSLPTQQKLKALRSPGGATGYGRARISQFFHKFMWHEGFTIIGSPSHDVKKIWPNDYAHFCDLMEKYEKEMKVLAERLTKMMLELLGIREEKRKWVGSKNTNGAVQLNFYPSCPEPKRAMGLAPHTDTSLFTILHQTQTTGLEIFKEGKGWVPVHPHPNALVVNTGDFFHIMSNARFRCALHRVTVNRTRKRYSVAYFYYPPMDYEVSPFDLNSAARFRPVTVKEYNGIKAKNFGQALSLISTSN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01524 345 Pfam 2OG-Fe(II) oxygenase superfamily 204 299 IPR044861 -
Cca03g01524 345 Coils Coil 164 184 - -
Cca03g01524 345 Pfam non-haem dioxygenase in morphine synthesis N-terminal 54 154 IPR026992 -
Cca03g01524 345 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 12 337 - -
Cca03g01524 345 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 12 337 - -
Cca03g01524 345 Gene3D - 18 327 IPR027443 -
Cca03g01524 345 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 200 301 IPR005123 -
Cca03g01524 345 SUPERFAMILY Clavaminate synthase-like 19 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01524 Cca-Chr3 33879518 33881450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01524 54 327 Glycosyltransferase AT5G59530 29.530 2.51e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01524 K04124 - gmx:100818754 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01524 03 33879518 33881450 Cca05g00560 05 12850527 12853967 PCT