Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00557 ATGGGTTCCCAAGAAAAAGAGCATCATGTTAATGTTGTTCGTGTTCATGTTGAGGGTCCTATAATCGTAGGTGCTGGTCCTTCTGGCCTAGCCGTGGCCGCGTGTCTATCAGAGCACAAAGTCCCTTTCGTGATTCTCGAGCGTAGCAACTGCATAGCCTCTCTTTGGCAACACAAAACCTACGACCGTCTCAAACTCCACCTCCCAAAGCACTTCTGCGAGCTTCCCCTCAAGGGCTTCCCCAACACTTTCCCAAAGTACCCCTCTAAGTACCAGTTCATATCCTACATGGAGTCCTACGCCAACCACTTCAACATTCACCCCAAGTTCAACCAAGGGGTTCAGAGTGCTCACTTTGATAAAGGGTCCAAGCTTTGGATCGTTAGGACCCTTGAGTTTGAGTATGTTTCCCACTGGCTTGTGGTGGCCACTGGCGAAAATGCTGAGCCTTTGGTCCCTAGAATTCCTGGCTTGGCCCTCTTTCGTGGGCCCATTGCTCACACCAGTGTCTACAAGTCTGGCTCTGGCTACACAAACCAAAGGGTCTTGGTCATTGGCTGTGGCAATTCAGGCATGGAAGTTAGCTTGGACCTTTGTAGACACAATGCCACTCCTTACATGGTTGCAAGAAACACAGTACATGTGCTTCCTAGGGAGATGTTTGGCTTCTCAACATTTGGCATAGCCATGGCTCTCTTTAAGTGGCTTCCGATCAAGTTAGTGGACAAGATCCTCTTGCTTGCAACAAACGTCATTTTGGGCAACACAAATCACTACGGCATCAAGAGGCCCAAAACCGGCCCAATAGAGCTCAAACTCGTCACAGGGAAAACCCCTGTCCTTGATGTGGGTCAACTTGCACAAATAAAATGTGGCAACATTAAGGTGATGGAGGGTGTGAAGGAGATAACAAGAAATGGTGCCAAATTTATGGATGGACAAGAAAGAGAATTCGATGCTATAATCTTGGCAACAGGGTACAAGAGCAACGTGCCTACTTGGCTTAAGGGGTGTGATTTTTTCACCGAAGATGGAATGCCCAAAACGCCCTTTCCTCATGGGTGGAAGGGAGAGGAGGGATTGTATACGGTGGGGTTCACGAGAAGAGGTCTTCAAGGAACGTCGTGTGATGCCATCAAGATCGCACAAGACATAGCGGAACAGTGGAGAACTGTAGAGGATCCAAGTCATTGCAATTCACATATCATCCTAGACCTTAACTTACCCCAATAA 1233 0.4809 MGSQEKEHHVNVVRVHVEGPIIVGAGPSGLAVAACLSEHKVPFVILERSNCIASLWQHKTYDRLKLHLPKHFCELPLKGFPNTFPKYPSKYQFISYMESYANHFNIHPKFNQGVQSAHFDKGSKLWIVRTLEFEYVSHWLVVATGENAEPLVPRIPGLALFRGPIAHTSVYKSGSGYTNQRVLVIGCGNSGMEVSLDLCRHNATPYMVARNTVHVLPREMFGFSTFGIAMALFKWLPIKLVDKILLLATNVILGNTNHYGIKRPKTGPIELKLVTGKTPVLDVGQLAQIKCGNIKVMEGVKEITRNGAKFMDGQEREFDAIILATGYKSNVPTWLKGCDFFTEDGMPKTPFPHGWKGEEGLYTVGFTRRGLQGTSCDAIKIAQDIAEQWRTVEDPSHCNSHIILDLNLPQ 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00557 410 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA1-RELATED 10 399 - -
Cca05g00557 410 PRINTS FAD-dependent pyridine nucleotide reductase signature 20 39 - -
Cca05g00557 410 PRINTS FAD-dependent pyridine nucleotide reductase signature 181 199 - -
Cca05g00557 410 PRINTS Pyridine nucleotide disulphide reductase class-II signature 19 41 - -
Cca05g00557 410 PRINTS Pyridine nucleotide disulphide reductase class-II signature 138 146 - -
Cca05g00557 410 PRINTS Pyridine nucleotide disulphide reductase class-II signature 177 201 - -
Cca05g00557 410 Gene3D - 19 391 IPR036188 -
Cca05g00557 410 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Cca05g00557 410 SUPERFAMILY FAD/NAD(P)-binding domain 180 394 IPR036188 -
Cca05g00557 410 Pfam Pyridine nucleotide-disulphide oxidoreductase 21 212 - -
Cca05g00557 410 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 10 399 - -
Cca05g00557 410 SUPERFAMILY FAD/NAD(P)-binding domain 21 213 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00557 Cca-Chr5 12659751 12662434 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00557 K11816 - gmx:100798781 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00557 05 12659751 12662434 Cca03g01530 03 33952720 33955474 PCT