Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01530 ATGGAGTGTATGAAGGGGGAAGAAGCAAAGTGCATGTGGGTGCAGGGCCCCATAATCGTAGGAGCAGGACCCTCAGGGCTAGCAGTAGCGGCATGCCTCACCCGCCACGGAGTGCCCTACGTGATCCTGGAGAAGAGCCACTGCATAACCTCCCTCTGGCAGCACAGAACCTACGACCGCCTCAAACTCCACCTCCCCAAACACTTCTGCCACCTCCCCTTCATGCCCTTCCCTCCCCATTTCCCTAAATACCCCTCCAAGAACCAGTTCATCTCCTACCTCCAGTCCTACGCCGCGCACTTCTCCATCCACCCTCGCTTCAACCACTCCGTTCACACCGCCCAGTACGACCCCGCTTCCCAACTTTGGCTCGTCACCACCCACCACTTTCTCTACATTTCCCCCTGGCTCGTCGTTGCCACCGGAGAGAATGCCGACCCTGTCATTCCCTCCATTTCCGGCATTCACACCTTTCAAGGCCCCATTCTCCACACCAGCCTCTACAAATCTGGCTCTCACTACAAAAACCAGAGGGTCTTGGTCATTGGTTGCGGCAACTCCGGCATGGAAGTTAGCTTGGACCTTTGCAGGCACAACGCTTTCCCTCACATGGTTGCAAGAAACACTGTGCATGTGTTGCCTAGGGAGATGTTTGGGTTCTCGACGTTTGGAATAGCGATGACTCTCTTGAAATGGCTTCCGATAAAGTTAGTAGACAAGTTGATGTTGGTGGTGGCTAGGTTGATGTTGGGTGACACCGCTCGCTATGGTGTGAGGAGGCCTAAAACGGGGCCAATAGAGCTCAAATTTGTCACTGGGAAAACTCCGGTGCTTGATGTTGGACAAGTGGCACAAATAAGATCTGGTAACATCAAGGTGATGGAAGGAGTGAAAGAGATAACAAGAAATGGTGCCAAGTTTATGGATGGACAAGAAAAGGAGTTCAGTGCTATAATATTGGCAACAGGATACAAAAGCAACGTGCCCACTTGGCTAAAGAAATGTGAAAGTTTAAAGAAAGAGGGAATGCCGAAAAGGCCGTTTCCAATGGGTTGGAAGGGGGAGAATGGATTGTATACAGTGGGGTTCACAGGAAGAGGTCTTCTTGGAACAGCCTCAGATGCCGTAAAGATTGCTAAAGACATCGCTGATCAATGGATGAACGTTAAGGACAAATCGTACCGTAATTCCCACATCATCTTGCTCAAGAGTACATAG 1218 0.5082 MECMKGEEAKCMWVQGPIIVGAGPSGLAVAACLTRHGVPYVILEKSHCITSLWQHRTYDRLKLHLPKHFCHLPFMPFPPHFPKYPSKNQFISYLQSYAAHFSIHPRFNHSVHTAQYDPASQLWLVTTHHFLYISPWLVVATGENADPVIPSISGIHTFQGPILHTSLYKSGSHYKNQRVLVIGCGNSGMEVSLDLCRHNAFPHMVARNTVHVLPREMFGFSTFGIAMTLLKWLPIKLVDKLMLVVARLMLGDTARYGVRRPKTGPIELKFVTGKTPVLDVGQVAQIRSGNIKVMEGVKEITRNGAKFMDGQEKEFSAIILATGYKSNVPTWLKKCESLKKEGMPKRPFPMGWKGENGLYTVGFTGRGLLGTASDAVKIAKDIADQWMNVKDKSYRNSHIILLKST 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01530 405 Pfam Pyridine nucleotide-disulphide oxidoreductase 18 209 - -
Cca03g01530 405 PRINTS Pyridine nucleotide disulphide reductase class-II signature 16 38 - -
Cca03g01530 405 PRINTS Pyridine nucleotide disulphide reductase class-II signature 135 143 - -
Cca03g01530 405 PRINTS Pyridine nucleotide disulphide reductase class-II signature 174 198 - -
Cca03g01530 405 SUPERFAMILY FAD/NAD(P)-binding domain 18 285 IPR036188 -
Cca03g01530 405 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA1-RELATED 8 393 - -
Cca03g01530 405 PRINTS FAD-dependent pyridine nucleotide reductase signature 17 36 - -
Cca03g01530 405 PRINTS FAD-dependent pyridine nucleotide reductase signature 178 196 - -
Cca03g01530 405 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 8 393 - -
Cca03g01530 405 Gene3D - 17 388 IPR036188 -
Cca03g01530 405 SUPERFAMILY FAD/NAD(P)-binding domain 174 380 IPR036188 -
Cca03g01530 405 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01530 Cca-Chr3 33952720 33955474 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01530 K11816 - gmx:100789347 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00557 05 12659751 12662434 Cca03g01530 03 33952720 33955474 PCT