Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00537 ATGGGTGGGAGAGGGATTAAGCTCTTCGATGAAGAAAGAAATGGTCTTTTCTCAATTTCCAATTTTGGGTCTCAAtggggtggtggtggtggtggtgTTCATGACCCTGTGGCTGCGGGTTTGTTGTTTGCAAGCATGAGTCAGGTGGGGGTGGGGTTCGGTGTTCAGGAACCGAACCCTTCTTCTGATTCGCCGCACAATGGTGGCATGAGGATCCCGTGCACCGAGTTGTACGTGACTTACGTGCAATCGGAGGGGAAGGTGAAGATTCTGGGGGTTCCTGAGGAAGAGGTGGTGGAAAATAACAAAAAGGGTGTCTTTAAGGGGTTGAAGATCAAGGTGAAGAACCCTTCGCTTAGGAGGTTGGTGAGTGGTGCCTTTGCTGGGGCAGTGTCACGCACCACTGTGGCACCCTTGGAGACCATAAGGACTCATTTGATGGTTGGAAGCAGTGGCAATTCCACTGTTGAGGTGTTCGGGAATATCATGAAGACTGATGGCTGGAAGGGGTTGTTTAGGGGCAATTTCGTCAATGTCATTCGGGTTGCACCTAGCAAGGCCATTGAGCTATTTGCTTATGATACTGTTAACAAGAACCTCTCACCAAAGCCGGGGGAACAGCCTAAACTCCCTATTCCTGCATCATTGATAGCGGGTGCTTGTGCTGGAGTTAGTTCAACTATTTGCACTTATCCTCTAGAGTTAGTAAAGACCCGACTAACTATCCAGAGGGGTGTTTATAATGGTTTACTAGATGCATTCATGAAAATAGTCAAAGAAGAGGGTGCTGGAGAGCTTTACAGAGGCCTTACTCCGAGTCTGATTGGAGTGATTCCATATGCTGCCACCAACTACTTTGCCTATGACACTTTGAGGAAAGCATACAGAAAAGTTTTTAAAACGGAGAAGATTGGCAACATAGAAACCCTTTTGATAGGATCAGCAGCAGGTGCTATTTCAAGTTCTGCAACCTTTCCACTTGAAGTGGCTCGCAAGCACATGCAAGTGGGAGCCCTCAGTGGAAGGCAAGTTTACAAAAATGTGATTCATGCCCTTGCAAGCATTCTTGAGCAAGAAGGGATCCAAGGATTGTATAAAGGGTTGGGACCTAGCTGCATGAAGTTGGTGCCAGCTGCAGGAATCTCTTTCATGTGCTATGAAGCATGCAAGAGGATATTGGTAGAGAACGATGATGAGGAGTAG 1203 0.4613 MGGRGIKLFDEERNGLFSISNFGSQWGGGGGGVHDPVAAGLLFASMSQVGVGFGVQEPNPSSDSPHNGGMRIPCTELYVTYVQSEGKVKILGVPEEEVVENNKKGVFKGLKIKVKNPSLRRLVSGAFAGAVSRTTVAPLETIRTHLMVGSSGNSTVEVFGNIMKTDGWKGLFRGNFVNVIRVAPSKAIELFAYDTVNKNLSPKPGEQPKLPIPASLIAGACAGVSSTICTYPLELVKTRLTIQRGVYNGLLDAFMKIVKEEGAGELYRGLTPSLIGVIPYAATNYFAYDTLRKAYRKVFKTEKIGNIETLLIGSAAGAISSSATFPLEVARKHMQVGALSGRQVYKNVIHALASILEQEGIQGLYKGLGPSCMKLVPAAGISFMCYEACKRILVENDDEE 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00537 400 Pfam Mitochondrial carrier protein 117 200 IPR018108 -
Cca05g00537 400 Pfam Mitochondrial carrier protein 304 396 IPR018108 -
Cca05g00537 400 Pfam Mitochondrial carrier protein 210 297 IPR018108 -
Cca05g00537 400 ProSiteProfiles Solute carrier (Solcar) repeat profile. 210 294 IPR018108 -
Cca05g00537 400 PRINTS Mitochondrial carrier protein signature 121 134 IPR002067 GO:0055085
Cca05g00537 400 PRINTS Mitochondrial carrier protein signature 134 148 IPR002067 GO:0055085
Cca05g00537 400 PRINTS Mitochondrial carrier protein signature 174 194 IPR002067 GO:0055085
Cca05g00537 400 PRINTS Mitochondrial carrier protein signature 225 243 IPR002067 GO:0055085
Cca05g00537 400 PRINTS Mitochondrial carrier protein signature 267 285 IPR002067 GO:0055085
Cca05g00537 400 PRINTS Mitochondrial carrier protein signature 313 335 IPR002067 GO:0055085
Cca05g00537 400 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 199 IPR018108 -
Cca05g00537 400 Gene3D Mitochondrial carrier domain 112 398 IPR023395 -
Cca05g00537 400 PANTHER ADENINE NUCLEOTIDE TRANSPORTER BT1, CHLOROPLASTIC/MITOCHONDRIAL 36 399 - -
Cca05g00537 400 PANTHER SOLUTE CARRIER FAMILY 25 36 399 - -
Cca05g00537 400 ProSiteProfiles Solute carrier (Solcar) repeat profile. 304 392 IPR018108 -
Cca05g00537 400 SUPERFAMILY Mitochondrial carrier 117 388 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00537 Cca-Chr5 12096652 12100088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00537 1 399 Organic Solute Cotransporters AT4G32400 64.516 1.79e-178 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00537 K14684 - gmx:100816041 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00537 05 12096652 12100088 Cca05g00537 05 12096652 12100088 ECH
Cca05g00537 05 12096652 12100088 Cca03g01558 03 34296911 34302182 PCT