Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01558 ATGGGTAGGAAGGGAATCCAACTATTTGATGAGAAAAGAGATGGGTTTTTCTCTGTCGGCAATTTGGGGTTCCAATTTGATGATGGGTATTATCAGCTCGGAGGTTTGTTTGCCAGCGTTAGTCAAATGGGAATGGGGTTTGATGTGCAACCCAGCGACCCTTCTGATTCGCGCGACAATAGTGGCGTGAAATTTCCATTGAACGAATTGTTCCTAAAGTATGTTCAACCGCAGGGGAAAGATGAGGTTGCTGAGGAAGGGGTTAAGGGAAAAAAGAAAAAGGGTGGTCTTTCACTCAAGCTTAAGATCAGGAACCCTTCACTGAGGAGGTTGTTTAGTGGGGCAATTGCTGGGGCTGTGTCTCGCACTGCAGTGGCGCCTTTGGAGACTATAAGGACTCACTTGATGGTGGGGAGTAGTGGCCATTCCACCACTGAGGTGTTTCACAATATCATGCAAACTGATGGCTGGAAGGGGTTGTTCAGGGGTAATCTTGTCAATGTCATTCGGGTTGCACCTAGCAAGGCCATTGAACTATTTGCTTACGACACAGTGAACAAGAACCTATCTGCAAAGCCTGGGGAGCAGCCCAAAGTCCCGATTCCTCCATCATTGATTGCAGGTGCCTGTGCCGGAGTGAGTTCAACTATATGCACATATCCTCTTGAATTAGTCAAGACTCGACTAACTATCCAGAGAGGTGTTTATGATGGTATGCTTGATGCATTCTTGAAAATAATTCAAGAAGAGGGTCCCTCTGAACTTTACAGAGGCCTCACAGCTAGTCTTATCGGAGTTATCCCGTATGCTGCTACCAATTACTTCGCCTATGACACTCTAAAGAAAGCATACCGGAAAGTTTTCAAACAAGAGAAGGTCGGCAACATAGAAACTCTTTTGATTGGCTCGGCTGCTGGTGCCATTTCAAGTAGTGCAACTTTTCCACTTGAGGTGGCTCGCAAGCACATGCAAGTTGGAGCTCTCAGTGGAAGGCAGGTTTACAAGAATGTGATTCATGCCTTGGCATGCATACTAGAACAAGAAGGGATCCAAGGTTTGTTTAGAGGGCTAGGACCTAGTTGCATGAAGTTGGTACCAGCTGCTGGAATCTCTTTCATGTGCTACGAAGCATGCAAGAAGATATTGCTAGAAAACGAAGAGGAGGATTAG 1170 0.4607 MGRKGIQLFDEKRDGFFSVGNLGFQFDDGYYQLGGLFASVSQMGMGFDVQPSDPSDSRDNSGVKFPLNELFLKYVQPQGKDEVAEEGVKGKKKKGGLSLKLKIRNPSLRRLFSGAIAGAVSRTAVAPLETIRTHLMVGSSGHSTTEVFHNIMQTDGWKGLFRGNLVNVIRVAPSKAIELFAYDTVNKNLSAKPGEQPKVPIPPSLIAGACAGVSSTICTYPLELVKTRLTIQRGVYDGMLDAFLKIIQEEGPSELYRGLTASLIGVIPYAATNYFAYDTLKKAYRKVFKQEKVGNIETLLIGSAAGAISSSATFPLEVARKHMQVGALSGRQVYKNVIHALACILEQEGIQGLFRGLGPSCMKLVPAAGISFMCYEACKKILLENEEED 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01558 389 ProSiteProfiles Solute carrier (Solcar) repeat profile. 293 381 IPR018108 -
Cca03g01558 389 ProSiteProfiles Solute carrier (Solcar) repeat profile. 105 188 IPR018108 -
Cca03g01558 389 Gene3D Mitochondrial carrier domain 102 387 IPR023395 -
Cca03g01558 389 ProSiteProfiles Solute carrier (Solcar) repeat profile. 199 283 IPR018108 -
Cca03g01558 389 PANTHER ADENINE NUCLEOTIDE TRANSPORTER BT1, CHLOROPLASTIC/MITOCHONDRIAL 30 387 - -
Cca03g01558 389 PRINTS Mitochondrial carrier protein signature 110 123 IPR002067 GO:0055085
Cca03g01558 389 PRINTS Mitochondrial carrier protein signature 123 137 IPR002067 GO:0055085
Cca03g01558 389 PRINTS Mitochondrial carrier protein signature 163 183 IPR002067 GO:0055085
Cca03g01558 389 PRINTS Mitochondrial carrier protein signature 214 232 IPR002067 GO:0055085
Cca03g01558 389 PRINTS Mitochondrial carrier protein signature 256 274 IPR002067 GO:0055085
Cca03g01558 389 PRINTS Mitochondrial carrier protein signature 302 324 IPR002067 GO:0055085
Cca03g01558 389 PANTHER SOLUTE CARRIER FAMILY 25 30 387 - -
Cca03g01558 389 SUPERFAMILY Mitochondrial carrier 106 377 IPR023395 -
Cca03g01558 389 Pfam Mitochondrial carrier protein 107 190 IPR018108 -
Cca03g01558 389 Pfam Mitochondrial carrier protein 293 385 IPR018108 -
Cca03g01558 389 Pfam Mitochondrial carrier protein 199 286 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01558 Cca-Chr3 34296911 34302182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01558 1 388 Organic Solute Cotransporters AT4G32400 68.622 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01558 K14684 - gmx:100810035 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01558 03 34296911 34302182 Cca03g01558 03 34296911 34302182 ECH
Cca05g00537 05 12096652 12100088 Cca03g01558 03 34296911 34302182 PCT