Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00524 ATGTCTAAAGTTCTCGGCTTTTCCGGAGGTGATGACTTTTGCCCTGGGGGATCAATATACGCCAACCCCAAGGAAGCAAGTTTCTTCCTGCCTCTTGGTCCTCAAGTTGATGTGTACTTTCCTCCTCGTAAGAGATCACGTGTCAATGCCCCATTTGTTTTTGATGGAGAATGGTTTGAGCAGAAGCAGAAAACCTCTATTGAAGCCTTGCCAGATGAGTGTCTCTTTGAGATCTTTAGGAGGTTGCCTGCTGGCGAAGACCGGAGTGCATGTGCTTGCGTTTCCAAGCGCTGGCTCATGCTTCTAAGCAGTATTTGCAAGAACGAAATCTGCGTTAACAAAAGTGTGGAGATCAAGAGTGAAAAGGAGGGTGATGATGTTGAATTTGGTGGTGAGGGATACCTCTCTCGAAGCTTGGAAGGAAAGAAGGCAACAGATGTTAGACTTGCTGCCATAGCTGTTGGTACTGCATCTCGAGGAGGATTGGGGAAGCTTTCCATCCGTGGAAGCAACATGGTTCGTGGGGTAACTAGTCTTGGTCTCAAGGCAGTTGCTCATGGATGCCCTTCTTTGAAGTCTCTTTCTCTATGGAATGTTGCCACTGTTGGTGACGAGGGCCTAATTGAGATTGCTAATGGATGTCAACAGCTGGAGAAGCTTGACCTTTGCAAGTGCCCCTCAATTTCTGATAAGGCTGTAATTGCAATTGCAAAGAACTGCCAGAATCTGACTGAGCTGTCCTTAGAATCATGTCCTAACATTGGCAATGAAGGTCTTAGAGCTATTGGGAAGTTCTGCTCCCATCTAAGGTCCATATCTATCAAGGACTGCAGTGGTGTTAGTGATCAGGGAATTGCTGGATTGTTTTCTTCAACATCTTTGGTTCTCACAAAGGTGAAGCTCCAGGCACTGACTGTTTCTGATCTCTCTCTAGCTGTTATTGGACATTATGGCAAGTCGGTTACCGATATTGTCCTTAATTGCCTCCCAAATGTCAGTGAGAAGGGGTTCTGGGTCATGGGTAATGGTAATGGATTGCAGAAGCTGAAGTCTCTCACTGTTGCATCCTGCAGAGGAGTAACAGATATTGGGCTTGAAGCTGTTGGAAAGGGTTGTCCAAATCTGAAAATTGCTCACCTTAACAAGTGTGCATTTCTGTCAGACAATGGGTTGATATCATTCGCCAAGGCAGCTTCATCACTCGAGAGCCTTCGATTGGAAGAGTGCCACAGGATTACCCAATTTGGGTTTTTTGGTGTCCTTTTTAACTGTGGTGCAAAATTGAAGGCCATGTCGTTGATGAGCTGCTACGGGATCAAAGATCTGAATTTGGTGTTGCCAACAGTGACTCCATGTGAATCACTTCGATCATTGTCTATCTGCAACTGCCCTGGATTTGGCAACGCCTCCCTGTCTGTGTTGGGAAAGCTGTGCCCTCAGCTTCAGCATGTTGAATTGAGTGGACTCGAGGCAGTGACAGATGCAGGTCTTCTTCCACTGCTTGAGAGTTCTGAGGCTGGTTTGGTTAAAGTGAATCTTAGTGGTTGCACAAACGTTACCGACAAAGTTGTTTCATCCTTGGTCAATCTGCATGGTTGGACCCTTGAAAATCTTAATCTTGATGGTTGTAAAAACATCAGCGATGCTAGCTTGATGGCAATTGCTGAAAACTGTGCATTGCTATGTGATCTTGATGTCTCCAAGTGCACGATAACAGATGCTGGGATTGCAGCCCTGGCACATGCCAAACAGGTTAATCTGCAAATTCTTTCTTTGTCAGGTTGTACTTTGGTCTCAGACAGGAGCTTGCCCGCTTTGAGAAAATTGGGTCACACCCTGTTGGGACTCAACATCCAGCACTGCAATGCAATCAACAGCAGCACGGTTGACACGCTTGTGGAGCTTCTCTGGAGGTGTGACATCCTCTCCTGA 1932 0.4627 MSKVLGFSGGDDFCPGGSIYANPKEASFFLPLGPQVDVYFPPRKRSRVNAPFVFDGEWFEQKQKTSIEALPDECLFEIFRRLPAGEDRSACACVSKRWLMLLSSICKNEICVNKSVEIKSEKEGDDVEFGGEGYLSRSLEGKKATDVRLAAIAVGTASRGGLGKLSIRGSNMVRGVTSLGLKAVAHGCPSLKSLSLWNVATVGDEGLIEIANGCQQLEKLDLCKCPSISDKAVIAIAKNCQNLTELSLESCPNIGNEGLRAIGKFCSHLRSISIKDCSGVSDQGIAGLFSSTSLVLTKVKLQALTVSDLSLAVIGHYGKSVTDIVLNCLPNVSEKGFWVMGNGNGLQKLKSLTVASCRGVTDIGLEAVGKGCPNLKIAHLNKCAFLSDNGLISFAKAASSLESLRLEECHRITQFGFFGVLFNCGAKLKAMSLMSCYGIKDLNLVLPTVTPCESLRSLSICNCPGFGNASLSVLGKLCPQLQHVELSGLEAVTDAGLLPLLESSEAGLVKVNLSGCTNVTDKVVSSLVNLHGWTLENLNLDGCKNISDASLMAIAENCALLCDLDVSKCTITDAGIAALAHAKQVNLQILSLSGCTLVSDRSLPALRKLGHTLLGLNIQHCNAINSSTVDTLVELLWRCDILS 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00524 643 PANTHER UNCHARACTERIZED 16 633 - -
Cca05g00524 643 Pfam Leucine Rich repeat 239 262 IPR001611 GO:0005515
Cca05g00524 643 Pfam Leucine Rich repeat 564 580 IPR001611 GO:0005515
Cca05g00524 643 SMART LRR_CC_2 346 371 IPR006553 -
Cca05g00524 643 SMART LRR_CC_2 398 423 IPR006553 -
Cca05g00524 643 SMART LRR_CC_2 584 609 IPR006553 -
Cca05g00524 643 SMART LRR_CC_2 505 530 IPR006553 -
Cca05g00524 643 SMART LRR_CC_2 452 477 IPR006553 -
Cca05g00524 643 SMART LRR_CC_2 558 582 IPR006553 -
Cca05g00524 643 SMART LRR_CC_2 214 239 IPR006553 -
Cca05g00524 643 SMART LRR_CC_2 266 291 IPR006553 -
Cca05g00524 643 SMART LRR_CC_2 240 265 IPR006553 -
Cca05g00524 643 SMART LRR_CC_2 188 213 IPR006553 -
Cca05g00524 643 SMART LRR_CC_2 532 557 IPR006553 -
Cca05g00524 643 SMART LRR_CC_2 478 503 IPR006553 -
Cca05g00524 643 SMART LRR_CC_2 372 397 IPR006553 -
Cca05g00524 643 SUPERFAMILY RNI-like 181 294 - -
Cca05g00524 643 Gene3D Ribonuclease Inhibitor 441 643 IPR032675 -
Cca05g00524 643 Gene3D Ribonuclease Inhibitor 254 440 IPR032675 -
Cca05g00524 643 Gene3D Ribonuclease Inhibitor 134 253 IPR032675 -
Cca05g00524 643 PANTHER EIN3-BINDING F-BOX-LIKE PROTEIN 16 633 - -
Cca05g00524 643 SUPERFAMILY F-box domain 63 104 IPR036047 GO:0005515
Cca05g00524 643 SMART fbox_2 70 111 IPR001810 GO:0005515
Cca05g00524 643 SUPERFAMILY RNI-like 313 639 - -
Cca05g00524 643 Pfam F-box domain 70 106 IPR001810 GO:0005515
Cca05g00524 643 Gene3D - 60 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00524 Cca-Chr5 11856118 11859787 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00524 K14515 - gmx:100819226 1196.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00524 05 11856118 11859787 Cca05g00524 05 11856118 11859787 ECH
Cca05g00524 05 11856118 11859787 Cca03g01569 03 34443318 34447337 PCT