Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01569 ATGTCTAAAGTTTTCAGCTTTACCGGAACTGATGATTTTCTCCCTGGGGGTCCTATATATCCTAACCCCAAGGAACCAAGTCTCTTCTTGTCTCGTGGCCGTCAAGTTGATGTTTACTTTCCTCTTCAGAAGCAATCTCGCTTCAGTGTTCCATTTGACATCAGTGGAGAATGGTTTGAGCAGAAGCAGAAGCAGAAGCCAAAGACAAGTATTGAATCTCTGCCAGATGAATGCCTCTTTGAGATCCTTAGAAGGTTGCCTTCAGGTCAAGATAGGAGTATCTGTGCTTCTGTATCCAAGCGCTGGCTTATGCTTCTAAGCAGTATTTGTAAGAATGAAATCTGTATCAATGAAATTACCAGAAATGAAAACGAGGGTGAGGATCAGGAATATAGTGACGAAGGATACCTATCCCGAAACTTGGAGGGAAAGAAGGCTACAGATGTTAGACTTGCTGCCATTGCTGTTGGGACAGCATGTCGAGGAGGGTTGGGGAAGCTTTCAATTCGTGGAAGCAATTCAGATCGTGGGGTGACTAATGTAGGTCTCAAGGCAATTGCTCATGGATGCCCCTCTCTAAAGATTTTCTCTGTATGGGATGTTGCTACCATTAATGATGAAGGCCTGATTGAGATTGCTAGTGGGTGCCATCAGTTAGAAAAGCTTGACCTTTGCAAGTGCCCCAAAATTTCTGACAAGGCTCTAATTGCAGTCGCAAAGAACTGTCCAAATCTGACCGAGTTATCAATAGAGTCATGTCCTAGCATTGGTAATGAAGGTCTAATAGCTATTGGGAAGTCGTGTCCAAATCTAAGGTCTATCTCAATTAAGGATTGCTCTGGAGTTGGTGATCAGGGAATTTCCGGCCTCTTGTCCGCGGCTTCTTTTGTTTTATCAAAGGTTAAGCTTCAGTCGCTGATGGTTTCTGATCTCTCTCTAGCTGTGATTGGGCATTATGGCTTTGCAGTTACAGATCTTGTCCTCAGTTGCCTCCCAAATGTCAGTGAGAAAGGGTTCTGGGTTATGGGTAATGGCCGTGGACTGCAGAAACTAACTTCAATCACAATTGAATGCTGCCAAGGAGCAACAGATACTGGGCTTGAAGCTATTGGAAAAGGTTGTCCAAATGTGCAAAACTTTCAGCTTCGTAAGTGTGCATTTCTGTCAGACAAGGGGTTGGTATCATTTACCAAGGCTGCTCCATCAATTGAGAGCCTACAGTTGGAAGCGTGCCACAGAATTACCCAAATTGGGCTTTTCGGTGTCTTTTTTAACTGTGGTGCAAAATTGAAGGTTCTTACTCTGATTAGCTGCTATGGGATCAAAAATCTTAATATGGAATTGCCAGCAATATCACCTAGTGAATCAATTTGGTCATTATCAATCCGTGACTGCCCTGGATTTGACAATGCTACTCTTGCTTTACTTGGAAAGCTCTGTCCTCGGCTTCAGCATGTTGAATTGAGTGGACTTCAGGGAGTAACAGACGCAGGGTTTCTTCCATTGCTTGAGAGCTCTGAGGCTGGTCTGGTTAAAGTTAATATAAGAGGTTGCATAAATGTGACAGACAGAGTAGTTTTGTCCATGGTTAACTCACATGGATGGACTCTTGAGGTGCTAAACCTTGATGGCTGTATAAGAGTCAGCGATGCTAGCTTGATGGCAATTGCAGGCAATTGCCCATTGCTCTCTGATCTCGATGTATCCAAGTGTGCAATCACCGATACTGGTATTGCAGCCCTTGCACGTGGAAAGCAGCTCAACCTGGAGGTACTTTCTTTGGCAGGTTGCTCTTTGGTTTCAGACAAGAGCTTGCCTGCGTTGAAGAAACTGGGCGATTCTCTTGCAGGATTAAACATCAAGCGTTGCAATGCAATCAGCACCCGCTCCGTAGACATGCTTTTGGAACATCTCTGGATGTGTGACATCCTCTACTGA 1938 0.4438 MSKVFSFTGTDDFLPGGPIYPNPKEPSLFLSRGRQVDVYFPLQKQSRFSVPFDISGEWFEQKQKQKPKTSIESLPDECLFEILRRLPSGQDRSICASVSKRWLMLLSSICKNEICINEITRNENEGEDQEYSDEGYLSRNLEGKKATDVRLAAIAVGTACRGGLGKLSIRGSNSDRGVTNVGLKAIAHGCPSLKIFSVWDVATINDEGLIEIASGCHQLEKLDLCKCPKISDKALIAVAKNCPNLTELSIESCPSIGNEGLIAIGKSCPNLRSISIKDCSGVGDQGISGLLSAASFVLSKVKLQSLMVSDLSLAVIGHYGFAVTDLVLSCLPNVSEKGFWVMGNGRGLQKLTSITIECCQGATDTGLEAIGKGCPNVQNFQLRKCAFLSDKGLVSFTKAAPSIESLQLEACHRITQIGLFGVFFNCGAKLKVLTLISCYGIKNLNMELPAISPSESIWSLSIRDCPGFDNATLALLGKLCPRLQHVELSGLQGVTDAGFLPLLESSEAGLVKVNIRGCINVTDRVVLSMVNSHGWTLEVLNLDGCIRVSDASLMAIAGNCPLLSDLDVSKCAITDTGIAALARGKQLNLEVLSLAGCSLVSDKSLPALKKLGDSLAGLNIKRCNAISTRSVDMLLEHLWMCDILY 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01569 645 SMART LRR_CC_2 586 611 IPR006553 -
Cca03g01569 645 SMART LRR_CC_2 190 215 IPR006553 -
Cca03g01569 645 SMART LRR_CC_2 242 267 IPR006553 -
Cca03g01569 645 SMART LRR_CC_2 348 373 IPR006553 -
Cca03g01569 645 SMART LRR_CC_2 268 293 IPR006553 -
Cca03g01569 645 SMART LRR_CC_2 507 532 IPR006553 -
Cca03g01569 645 SMART LRR_CC_2 560 584 IPR006553 -
Cca03g01569 645 SMART LRR_CC_2 534 559 IPR006553 -
Cca03g01569 645 SMART LRR_CC_2 480 505 IPR006553 -
Cca03g01569 645 SMART LRR_CC_2 216 241 IPR006553 -
Cca03g01569 645 SMART LRR_CC_2 374 399 IPR006553 -
Cca03g01569 645 SMART LRR_CC_2 400 425 IPR006553 -
Cca03g01569 645 SMART LRR_CC_2 454 479 IPR006553 -
Cca03g01569 645 Gene3D Ribonuclease Inhibitor 63 296 IPR032675 -
Cca03g01569 645 Gene3D Ribonuclease Inhibitor 297 452 IPR032675 -
Cca03g01569 645 Gene3D Ribonuclease Inhibitor 453 644 IPR032675 -
Cca03g01569 645 SUPERFAMILY RNI-like 305 641 - -
Cca03g01569 645 Pfam F-box-like 71 105 IPR001810 GO:0005515
Cca03g01569 645 SMART fbox_2 74 115 IPR001810 GO:0005515
Cca03g01569 645 PANTHER UNCHARACTERIZED 16 636 - -
Cca03g01569 645 Pfam Leucine Rich repeat 241 264 IPR001611 GO:0005515
Cca03g01569 645 Pfam Leucine Rich repeat 560 582 IPR001611 GO:0005515
Cca03g01569 645 SUPERFAMILY RNI-like 176 421 - -
Cca03g01569 645 SUPERFAMILY F-box domain 65 116 IPR036047 GO:0005515
Cca03g01569 645 PANTHER EIN3-BINDING F-BOX-LIKE PROTEIN 16 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01569 Cca-Chr3 34443318 34447337 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01569 K14515 - gmx:100805418 1112.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01569 03 34443318 34447337 Cca03g01569 03 34443318 34447337 ECH
Cca05g00524 05 11856118 11859787 Cca03g01569 03 34443318 34447337 PCT