Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00521 ATGGATCCAATTAACCTTTTACCTGCTGATGATGGGGTTGAAGTGGTCCACCAAAATGGTGTTCATGATGAACCATCTAATTCTGGAGGGGATGGTTGTGTTTCATATGATTTAGACTCCAGTGTTGCCGAAACTGAAGAAACCGTAGCTCTAAATGGAATTTTTGATAATTTCCATCAGTTTGAAAGTGCTGCAACTGATAACTCGTTGGTTTCAGAAATCGAAGAATCAAATGACATCATTGATGGCAATAATACTACCAATCCTAAGGAAGAGGAGGTGAAAATAACAGATCAAAATAAGCAATCAAGAGCACAAAAGGGTCTTTTCAAGAATAAGAATGCAAAGGCTACAAGTTCTGGTGGTGTTCGTGCAAGTTTGGCAAACAAGAGCAAAACTGGAAAAGATAAAGAAGCATCTTCTGTTTCAAATGGTACTTCGGCTTCAGATTCTCACCCAAGACAGTCTATTAAAAGCAGATCATTCAACGACAGGCAGACACAATTATCAAAGCACCCTTCAAAGTCTGATGCAGCAAATTCTGAAGTATCTGTGGAGAAGACAAAACCAAAATCACTGAAAAAAGGACCCCTTGATAAAGTTCAAGGAGAAGCAGAATCTTCCTTAAGTACAAACACAGAAGATGCCAAACCTCGAAAAATGGGGACACTTCCAAATTATGGATTCAGTTTTAAGTGTGGTGAACGAGCTGAGAGAAGAAGAGAGTTCTACAATAAGCTTGAGGAAAGGATTCAAGCAAAGGAGGTGGAGAAGAGTAACTTGCAAGCAAAAACCAAGGAGAGCCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTCTAACATTTAAAGCAACACCAATGCCAAGTTTTTACCAGGAGCCTCCTCCTCCTAAGGTGGAGCTAAAGAAGATACCAACTACAAGAGCCAAATCACCCAAGCTTGGTCGTAAGAAGGATTCAGCAAATTCAGAGTCAGATGGAAACACAAGCAGCAGTTCACGACTAGCTCGTTTAAGTCTGGATGAGAAAGTGTCAGAGAGTAACCCCACCAAGGGACCTGCTCCTCCCATTCATCAAAAGAAGCCACAACGAAGATCGCTTCCTACTCGACTGGTTTCTGAAAAGAACAGTTTATCTTCATCAAAGGCCATCAAAGATAAAAAGTCTTCCTTATCTAGTGCTGCCAAAAAAGATACCAACTTATCCAATGCAAATAAATCTGAGATTGTTGCAAATGAAAAGAAAGGTACCTTGTCCATTGAGATAAGTGATGCTATGCCTCTTAATGTGGTTCCTTCAGACAAGCCAAGTGAAGAAGAATCTCATGTGAATGGTGATGTAGCAGTTGAAGAGAATCTTCAAACCTCCTTGGCACAAGAATCCATTGCAGCAGAGCATTGA 1401 0.4047 MDPINLLPADDGVEVVHQNGVHDEPSNSGGDGCVSYDLDSSVAETEETVALNGIFDNFHQFESAATDNSLVSEIEESNDIIDGNNTTNPKEEEVKITDQNKQSRAQKGLFKNKNAKATSSGGVRASLANKSKTGKDKEASSVSNGTSASDSHPRQSIKSRSFNDRQTQLSKHPSKSDAANSEVSVEKTKPKSLKKGPLDKVQGEAESSLSTNTEDAKPRKMGTLPNYGFSFKCGERAERRREFYNKLEERIQAKEVEKSNLQAKTKESQEAEIKMLRKSLTFKATPMPSFYQEPPPPKVELKKIPTTRAKSPKLGRKKDSANSESDGNTSSSSRLARLSLDEKVSESNPTKGPAPPIHQKKPQRRSLPTRLVSEKNSLSSSKAIKDKKSSLSSAAKKDTNLSNANKSEIVANEKKGTLSIEISDAMPLNVVPSDKPSEEESHVNGDVAVEENLQTSLAQESIAAEH 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00521 466 Pfam Targeting protein for Xklp2 (TPX2) domain 229 299 IPR027329 -
Cca05g00521 466 MobiDBLite consensus disorder prediction 182 201 - -
Cca05g00521 466 MobiDBLite consensus disorder prediction 282 449 - -
Cca05g00521 466 PANTHER PROTEIN WVD2-LIKE 5-RELATED 1 456 - -
Cca05g00521 466 MobiDBLite consensus disorder prediction 324 346 - -
Cca05g00521 466 MobiDBLite consensus disorder prediction 369 412 - -
Cca05g00521 466 MobiDBLite consensus disorder prediction 77 227 - -
Cca05g00521 466 PANTHER PROTEIN WVD2-LIKE 4 1 456 IPR044833 GO:0008017
Cca05g00521 466 MobiDBLite consensus disorder prediction 138 181 - -
Cca05g00521 466 MobiDBLite consensus disorder prediction 303 323 - -
Cca05g00521 466 Coils Coil 244 271 - -
Cca05g00521 466 MobiDBLite consensus disorder prediction 101 127 - -
Cca05g00521 466 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00521 Cca-Chr5 11802104 11809115 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00521 - - gmx:100786958 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00521 05 11802104 11809115 Cca05g00521 05 11802104 11809115 ECH
Cca05g00521 05 11802104 11809115 Cca03g01570 03 34450872 34456858 PCT