Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01570 ATGATGGATCCAAGCAACCTTTTGCCAGCTGATGGACTTGATGAAGTCCACCAAAATGGTGTTCATGACGAACTGTCTAATGGAAAGGATGGTGTTGCTTCCAATGTAGACCCTGTTTTAACCAAAATTATAGAAACTGCAGCTCAGAATGGAAATTTCGAAAATTTCAATCAGTCTGATAGCACTGTAACTGATTACTCATCCAAGGCAGAAATCGAAGAAGGATCAAATGACAATGTAGATGGAAACAATGTCATCATTTCTAAGGAAGAGGAAGTGGAAATCATAGATCGGACAGGACAATTAAAAGCAGGAAAAGTGTCCTTCAAGAATAAGAATGTAAAGCCACCAAGCCCCAGAGGTGTTCATGCGAGTTCAATAAAAAAGAGCAAAGATGGAAAAGATGAAGAGGTAGCATCTGCTGTTTCAAATGGTAGTTCTGCTTTGGACTCTCACCCAAGACAGCCTATTAAAAACAGATCATTGAATGACAAGCAGACTCGATTGTTGAAGCTCCCTGGAAAGTTAAATGCAGCACCTTCTGAAGCATCAATGGAGAAGACTAGACCACGCTTATCAAAGAAAGGGCCCCTTGATAATCTTCAAGGAGAAGCAGAGTCTTCTTCTCCTACTGCAGATGAAAAGCCTCGCAGGGTGGGGATGCTCCCAAATTATGGATTCAGTTTCAAGTGTGATGAGCGAGCTGAGAGAAGAAAAGAGTTCTACACTAAGCTTGAGGAAAAGATTCATGCAAAGGAAGTGGAGGAGAGTAACCTGCAAGCAAAAACCAAGGAGACCCAAGAAGCTGAGATTAAGATGCTTAGAAAAAGTCTAGGATTTAAAGCAACTCCAATGCCAAGCTTCTACCAAGAGCCTCCTCCCCCTAGGGTGGAGTTAAAAAAGATGCCAACTACAAGAGCAAAATCTCCCAAGCTTGGTCGTAAGAAGAGTTCAACATCTTCAGAGCCAGAAGGAAACACTAGCAGCAGTGCTCGACTAGGTCGTTTAAGTCTGGATGAGAAAGTGTCTCAGACTAACCCCACTAAAGGAATTACTCCTGCTCATCAAAAGAAGCCACAGAGAAAGTCTCTTCCTCCGCGACTGACTTCTGAAAAGATCAGTTCATCCAATTCAGCATCTGTGCGGACCCCATCTAAGGCAGTGAATGATAACAAAACCTCCTTATCAAGTGTAACGACTGAAGTTTCCATTGCAACAGGGGAAGAGAAAGTTGAAATAGCTGCAGCCACTGAAGAGAACAATGTCTTATTGGATGAGACTAGTAAAGCTCTGCCTCTGAATGTAGAGCCAGGTGAAGCAGAATCTCCTGTGAATGGTGATTTAGCCATTGAAGAGAAACCACAGCTCGCGGCCTTGGTACAAGAACCGATAGCAGCTGAGCACTAA 1407 0.4307 MMDPSNLLPADGLDEVHQNGVHDELSNGKDGVASNVDPVLTKIIETAAQNGNFENFNQSDSTVTDYSSKAEIEEGSNDNVDGNNVIISKEEEVEIIDRTGQLKAGKVSFKNKNVKPPSPRGVHASSIKKSKDGKDEEVASAVSNGSSALDSHPRQPIKNRSLNDKQTRLLKLPGKLNAAPSEASMEKTRPRLSKKGPLDNLQGEAESSSPTADEKPRRVGMLPNYGFSFKCDERAERRKEFYTKLEEKIHAKEVEESNLQAKTKETQEAEIKMLRKSLGFKATPMPSFYQEPPPPRVELKKMPTTRAKSPKLGRKKSSTSSEPEGNTSSSARLGRLSLDEKVSQTNPTKGITPAHQKKPQRKSLPPRLTSEKISSSNSASVRTPSKAVNDNKTSLSSVTTEVSIATGEEKVEIAAATEENNVLLDETSKALPLNVEPGEAESPVNGDLAIEEKPQLAALVQEPIAAEH 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01570 468 Pfam Targeting protein for Xklp2 (TPX2) domain 227 298 IPR027329 -
Cca03g01570 468 PANTHER PROTEIN WVD2-LIKE 4 2 457 IPR044833 GO:0008017
Cca03g01570 468 Coils Coil 242 272 - -
Cca03g01570 468 MobiDBLite consensus disorder prediction 55 78 - -
Cca03g01570 468 MobiDBLite consensus disorder prediction 367 402 - -
Cca03g01570 468 MobiDBLite consensus disorder prediction 275 402 - -
Cca03g01570 468 MobiDBLite consensus disorder prediction 140 156 - -
Cca03g01570 468 MobiDBLite consensus disorder prediction 314 353 - -
Cca03g01570 468 MobiDBLite consensus disorder prediction 107 225 - -
Cca03g01570 468 MobiDBLite consensus disorder prediction 55 70 - -
Cca03g01570 468 PANTHER PROTEIN WVD2-LIKE 5-RELATED 2 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01570 Cca-Chr3 34450872 34456858 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01570 - - gsj:114408962 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01570 03 34450872 34456858 Cca03g01570 03 34450872 34456858 ECH
Cca05g00521 05 11802104 11809115 Cca03g01570 03 34450872 34456858 PCT