Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00509 ATGGCCTCCAACAAGCTCATTGCCACCATTTTGGTGCTTTCTCTCCTTGCCTACTCAACATTCACCAATGCATGTGGCTCATGCAATAAGccttctccttctcctcctcctccATCAGGGAAGTGCCCCAAAGACACATTGAAGCTAGGGGTGTGTGCTGACATTCTAGGGCTTGTTAATGTTGTTGTTGGCTCCCCTGCTTCAAGCAAGTGCTGTGCATTGCTTCAAGGCTTGGTTGATTTGGAGGCTGCACTTTGCCTTTGCACTGCTATTAAGGCCAATGTGCTAGGAATCAACTTGAATGTGCCTGTCACACTCAGTTTGCTACTCAGTGCTTGCCAAAAAACTGTTCCTCCTGGCTTCCAATGTGCATAG 375 0.4453 MASNKLIATILVLSLLAYSTFTNACGSCNKPSPSPPPPSGKCPKDTLKLGVCADILGLVNVVVGSPASSKCCALLQGLVDLEAALCLCTAIKANVLGINLNVPVTLSLLLSACQKTVPPGFQCA 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00509 124 PANTHER LIPID TRANSFER PROTEIN 1 25 - -
Cca05g00509 124 PANTHER LIPID TRANSFER PROTEIN 29 124 - -
Cca05g00509 124 PANTHER - 29 124 - -
Cca05g00509 124 PANTHER - 1 25 - -
Cca05g00509 124 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 45 123 IPR036312 -
Cca05g00509 124 SMART aai_6 42 123 IPR016140 -
Cca05g00509 124 Pfam Hydrophobic seed protein 42 124 IPR027923 -
Cca05g00509 124 CDD HPS_like 40 123 IPR027923 -
Cca05g00509 124 Gene3D - 41 124 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00509 Cca-Chr5 11475655 11476716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00509 32 123 Acyl Lipid Metabolism Gene Families AT4G22490 38.043 1.50e-18 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00509 - - gmx:547594 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00509 05 11475655 11476716 Cca05g00509 05 11475655 11476716 ECH
Cca05g00509 05 11475655 11476716 Cca03g01587 03 34651342 34652321 PCT