Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01587 ATGCCCTTCCCATTCTACACAATATATCTACACATCGTTACTTTTTTAATTCCCTTCATGGCTTCCAACACCAAACTCATTGCCACCATTTTGCTCCTCTCTATCCTTTCTTACTCCACATTCACTGGGGCTAATTGCCCACCATCCCCAAAGCCCACACCACCGAGCCCAAAGCCCACCCCACCAAGCCCAAAGCCCACCCCACCAACCCCAAAGCCCACCCCACCAAGCCCAAAGCCCACTCCACCAAGCCCAAAGCCCACACCCTCACCCTCACCCTCACCACCTTCTCAATCAAAGTGCCCCAAGGACACCTTAAAGCTAGGTGCTTGTGCTGACCTCTTAGGGCTTGTGAACATTATTATTGGAACTCCTCCTTCAAGCAAATGTTGCGCCTTGATCAAAGGTTTGGCTGATTTGGAAGCAGCACTTTGCCTTTGCACTGCGATTAAGGCCAATGTGCTTGGAATCAACTTGAACGTTCCTGTCACCCTCAGCTTGATCCTTAGTGCTTGCCAGAAAACTGTTCCTACTGGTTTCCAATGTCCCTAG 552 0.5018 MPFPFYTIYLHIVTFLIPFMASNTKLIATILLLSILSYSTFTGANCPPSPKPTPPSPKPTPPSPKPTPPTPKPTPPSPKPTPPSPKPTPSPSPSPPSQSKCPKDTLKLGACADLLGLVNIIIGTPPSSKCCALIKGLADLEAALCLCTAIKANVLGINLNVPVTLSLILSACQKTVPTGFQCP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01587 183 CDD HPS_like 99 182 IPR027923 -
Cca03g01587 183 PRINTS Proline rich extensin signature 52 64 - -
Cca03g01587 183 PRINTS Proline rich extensin signature 64 85 - -
Cca03g01587 183 PRINTS Proline rich extensin signature 89 105 - -
Cca03g01587 183 Pfam Hydrophobic seed protein 101 183 IPR027923 -
Cca03g01587 183 Gene3D - 97 183 IPR036312 -
Cca03g01587 183 PANTHER LIPID TRANSFER PROTEIN 67 183 - -
Cca03g01587 183 MobiDBLite consensus disorder prediction 47 98 - -
Cca03g01587 183 PANTHER - 67 183 - -
Cca03g01587 183 SMART aai_6 101 182 IPR016140 -
Cca03g01587 183 MobiDBLite consensus disorder prediction 46 102 - -
Cca03g01587 183 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 104 183 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01587 Cca-Chr3 34651342 34652321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01587 92 183 Acyl Lipid Metabolism Gene Families AT4G22490 37.895 5.77e-16 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01587 - - gmx:100526941 169.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01587 03 34651342 34652321 Cca03g01587 03 34651342 34652321 ECH
Cca05g00509 05 11475655 11476716 Cca03g01587 03 34651342 34652321 PCT