Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00507 ATGGAGATTCCACGTAAACACTTCCTCTCACCGATTTTCTTTCTCATTCTACTTTCGCTCGCCACCGTGGTGGCGCTGCATCGAGGTCAGTTACTCCAATTCGTGACAATCGCCGCTTCAAAACCTGCACATTCTGTTCCTCTAGATCGTCTCCGGACTCAGCTCTCCGGCCAGAATCCACTCCGCGCAGTCGGATACTCCGGCGAACTTTACCGGAAAAAATCCAGCCACCGAATTGGCGGAACTGATTCCAGGAAAGTAGGAAAAGTGGAACAAAGACTCGCGGCAGCAAGAGCTGCAATGCGCAAATCGGAATCAGAAGAGAGAAGCAATCTCACTGCGGCAACCACCACGCACGACGGCGGAGACCACCGTTACGTCCCCGCGGGAGCCATCTATCGTAACCCGCGCTTATTTGACCGAAGCTACTTAGAGATGGAGAAAATATTGAAGGTGTACGTATACCCCGAGGGTGAGCTACCAATTGTTCACGATGGTCCGTGCAAGGACATATACTCAATTGAAGGGAGGTTCCTCCATGAGATGGAACACGGCGCTGCCGCTGGGAGGTTTAGGACCAACAACCCCAATGCTGCTCACGTTTACTTTTTGCCATTCAGTGTCACTTGGATGGTCAAGTACCTCTATACTCCACTCTCATACGATATCACTCCTCTAAAGCAATTTGCCTCTGACTATGTGAGAGTGATATCTACAAGACACCCCTTCTGGAATAGAACTAATGGTGCAGACCACTTCATGCTTGCCTGTCATGATTGGGGTCCTCATGCTTCACGGGGCAATCCCTTCCTCTACAACACCTCAATCCGCGTCTTGTGCAACGCCAACACTTCAGAGGGGTTCAACCCTCGAAAGGACGTGTCGTTACCAGAAATCCACCTCTACGGAGGCGAAGTCTCCCCTAAACTTCTTTCACCCCCACCGGACACCACCCCCCGCCGCTATCTCGCCTTCTTCTCCGGCGGTCTCCACGGCCCAATCCGCCCCTCCCTCCTCCGCCACTGGAAAAACCACGACGAAGCCATTCGCGTCTACGAGTACCTCCCCAAAGACCTAGATTACTACTCCTTCATGCTCGACTCAAAGTTCTGTCTTTGCCCAAGTGGGCACGAAGTGGCCAGCCCCAGAATCGTGGAGGCAATTTACGCCGAATGCGTTCCCGTGATCCTGTCTAAGTACTACGTCTTGCCCTTCAGTGACGTGCTGCAGTGGGAAGCGTTTTCGGTGCAGGTGGATGTTTCAGACATTCCTAGATTGAAAGAGGTTCTTAGTGCCATTTCGGACGATGAGTATCGGAAGCTTAAGGAGGGAGTGAAGGCTGTGAGGAGGCATTTTACACTGAATCGGCCTGCCAAGAGATTCGATGTTTTTCACATGATCTTGCACTCTATATGGTTAAGGAGACTAAACATGGAACTCACATAG 1446 0.5159 MEIPRKHFLSPIFFLILLSLATVVALHRGQLLQFVTIAASKPAHSVPLDRLRTQLSGQNPLRAVGYSGELYRKKSSHRIGGTDSRKVGKVEQRLAAARAAMRKSESEERSNLTAATTTHDGGDHRYVPAGAIYRNPRLFDRSYLEMEKILKVYVYPEGELPIVHDGPCKDIYSIEGRFLHEMEHGAAAGRFRTNNPNAAHVYFLPFSVTWMVKYLYTPLSYDITPLKQFASDYVRVISTRHPFWNRTNGADHFMLACHDWGPHASRGNPFLYNTSIRVLCNANTSEGFNPRKDVSLPEIHLYGGEVSPKLLSPPPDTTPRRYLAFFSGGLHGPIRPSLLRHWKNHDEAIRVYEYLPKDLDYYSFMLDSKFCLCPSGHEVASPRIVEAIYAECVPVILSKYYVLPFSDVLQWEAFSVQVDVSDIPRLKEVLSAISDDEYRKLKEGVKAVRRHFTLNRPAKRFDVFHMILHSIWLRRLNMELT 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00507 481 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 72 479 IPR004263 GO:0006486|GO:0016757
Cca05g00507 481 Coils Coil 87 107 - -
Cca05g00507 481 Pfam Exostosin family 148 432 IPR040911 -
Cca05g00507 481 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 247 461 - -
Cca05g00507 481 Gene3D Glycogen Phosphorylase B; 321 456 - -
Cca05g00507 481 MobiDBLite consensus disorder prediction 100 120 - -
Cca05g00507 481 PANTHER EXOSTOSIN FAMILY PROTEIN 72 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00507 Cca-Chr5 11390862 11396154 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00507 - - gmx:100820065 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00507 05 11390862 11396154 Cca05g00507 05 11390862 11396154 ECH
Cca05g00507 05 11390862 11396154 Cca03g01589 03 34690061 34694086 PCT