Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01589 atgaaaaTTTGTCGAAGGCGCTTATTGTTTCTATTCAGAATTTTGTTGCTCTTTCCATCGTTGATCCTCATTGAATGGCTACTTCCATGGCAGTTCATGAGATTCACCGAATCCAATCTAGAATATTCCGTTCCTCTTCGAAGACAGCTTTCCGGCGAGACTCAACAACTTCATGCTCTTGGAGACGCCGTTCACTCAAATAACACCGTAATCAGGGAAGTAGGAAATgagaagagtagagaagaaaagcgagaagaagGACTAGCGCGAGCAAGAGCTGCAATGCGCTTAGCTGGAAAGAATCTCACTACGCCAACAACACACGATAACGACATTCCCGCTGGAACTGTTTATCGTAACCCTAGCATATTTTACCAGAGCTACTTGGAGATGGAAAAGATATTTAAGGTATACGTATACCCAGATGGGGACCTACCAATTGTTCACGACGGCCCGTGCAAGGACATATACTCGATTGAAGGGAGGTTCCTTCATGAGTTGGAATATGGGGTTGGGAGGTTTAGGACCAACGACCCCACTGCGGCTCACGTTTACTTTCTTCCATTCAGCGTCACATGGATGGTCAAGTACCTCTATACACCAGACTCTTACGACGTAACTCCTTTAAAGCATTTTGTCTCTGATTTCGTGAGAGTGATATCTACCAAGTACCCCTTCTGGAATAAAACTCGTGGTGCCGACCACTTCATGGTTGCTTGTCATGATTGGGGTCCTTATGCATCAGACGGAAACCCTTACCTCTACAACACCTCCATCCGTGTCTTATGCAATGCCAACACTTCTGAAGGCTTCAACCCTCTAAAGGATGTACCTCTACCGGAAATCCACCTCCACGGAGGCGAAGTATCCCCTAAACTCCTTTCACCTCCACCGGACAATGCTCCACGCCGCTATACTGCCTTCTTCGCCGGTGGCATGCACGGCCCAATTCGACCCATCCTGCTCCACCACTGGAAAAACCGAGACGACGATATACGTGTCTACGAGTATCTCCCGAAAGACCAAGACCTAGACTACTATTCCTTCATGCTCAATTCCAAGTTCTGCCTTTGTCCAAGTGGGTATGAAGTGGCTAGCCCCAGAATCGTGGAGTCAATTTACGCCGAATGTGTGCCCGTTATCCTGTCAAAGAATTATACGCTTCCCTTCAGTGACGTGCTGCGATGGGAGGGGTTTTCAGTGCAGGTGGATGTTTCAGATATTCCAAGGTTGAAAGAGGTGCTCAGTGCAATTTCAGAGAGAGAGTACCGAAAGCTCAAGAATGGAGTAACGGCTGTGAGGAGACATTTTACTCTGAATCAACCGGCTAAGAGATTTGATGTCTTTCACATGATCTTACATTCCATATGGCTCAGGAGATTAGACATAGATCTCCGATAA 1401 0.4568 MKICRRRLLFLFRILLLFPSLILIEWLLPWQFMRFTESNLEYSVPLRRQLSGETQQLHALGDAVHSNNTVIREVGNEKSREEKREEGLARARAAMRLAGKNLTTPTTHDNDIPAGTVYRNPSIFYQSYLEMEKIFKVYVYPDGDLPIVHDGPCKDIYSIEGRFLHELEYGVGRFRTNDPTAAHVYFLPFSVTWMVKYLYTPDSYDVTPLKHFVSDFVRVISTKYPFWNKTRGADHFMVACHDWGPYASDGNPYLYNTSIRVLCNANTSEGFNPLKDVPLPEIHLHGGEVSPKLLSPPPDNAPRRYTAFFAGGMHGPIRPILLHHWKNRDDDIRVYEYLPKDQDLDYYSFMLNSKFCLCPSGYEVASPRIVESIYAECVPVILSKNYTLPFSDVLRWEGFSVQVDVSDIPRLKEVLSAISEREYRKLKNGVTAVRRHFTLNQPAKRFDVFHMILHSIWLRRLDIDLR 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01589 466 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 65 463 IPR004263 GO:0006486|GO:0016757
Cca03g01589 466 Pfam Exostosin family 133 417 IPR040911 -
Cca03g01589 466 PANTHER XYLOGALACTURONAN BETA-1,3-XYLOSYLTRANSFERASE 65 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01589 Cca-Chr3 34690061 34694086 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01589 - - gmx:102659997 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01589 03 34690061 34694086 Cca03g01589 03 34690061 34694086 ECH
Cca05g00507 05 11390862 11396154 Cca03g01589 03 34690061 34694086 PCT