Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00499 ATGTTATATCTAATCTGTGTCACTTTCATAGAAAATTCTCAACCCTTCATTACTTACCCGTTCGAGTTCACCCACACAACCAAACACACCACTATCGCCATGTCCTCCATTTCCACTCTCAGGAGCAGATCCTCACCCTTCATCGCCCAACGCCTCTCAATCCAACGGTTCCAGATCCGCCACTCTTCCACCTCTTCGCCCGCCTCGTCGCTCCTGAACTCCTCGGACCCGGTTCGAACCGGCTTCGGCCTAAGGTGCATTTCGACCGTCCTGGCCGGCACCAGTTTAGGGTTTCTTCTGTACGGATTCTGCTCTTCTTCGCCCAATTCCGAGTTTGACTCAGCTCTGCTCAAAAGCTCAATCTCTTCTCTCGTTGACTGGTCAACTCCGACTCTCGAGGACCCAAACCGACGTCGTTCCTTCTTTCCAAAATTTTCCTTCCCTGAAATAAACGGTGGCTCGCTAGTTGGAGATGCCTTCAGGAGAAAGATTTTCTTCAACTATGAGAAGCGCATTCGGTTGCGAAGTCCTCCTGAAAAGGTTTTTGAATACTTTGCATCTGATCGTAGTCCAGAAGGAGAAGTACTGATGAAACCAGCAGATTTAATGCGGGCAGTGGTTCCTGTTTTCCCTCCATCTGAATCCCACCTTGTTAGAGATGGATACCTCGAAGGAGAAAGGAGGCCGGGCCATCTACGCTGCCCTCCTTCTGAATTTTTTATGCTCTTTGATGTAAACAATGACGGACTTATATCTTTTAAAGAGTATATCTTTTTTGTTACACTACTCAGCATCCCAGAATCAAGCTTTTCAGTGACATTTAAAATGTTTGATGTCGACAATAATGGGGAGATAAATAAGGAAGAATTCAAAAAAGTAATGGCATTGATGCGATCTCGTCATCGACAGGGTGTTCACCACAGGGATGGACTGCGAACTGGCCTAAAGGTGAATGATTCTGTGGAAGATGGAGGGCTGGTGGAATTCTTTTTTGATAAAGATGGAAATGGACGCCTCCAGCATGATAAATTCGTAAAATTTTTGAGAGACTTGCATGATGAGATTCTGAGGCTGGAGTTTGCTCATTATGACTACAAATCTCGACAAACCATATCAGCCAAGGACTTTGCACTCTCCATGGTTGCTTCTGCTGACATGAGTAATCTAGGCAGGTTGCTTGGACGGGTTGATGGATTGGATGATGATCCACGTTTTAAGGATTCACGAATCACATTTGAGGACTTCAAAAACTTTGCAGAGCTACGGAAAAAATTATTACCATTTTCATTGGCCCTTTTCAGCTTTGGAGAAGTAAATGGTCTATTGACAAGAGACGATTTTCAACGAGCAGCATCTCATGTATGCGGCATTTCTCTCTCGGACAATGTGGTTGACATTGTTTTCCATTTGTTCGACACAAATCGGGATGGAAACCTAAGTTTTGATGAGTTTGTCAGAGTACTACACAAGCGTGAGAGGGACATTGCACAACCCGTGGAGACAGGAATAATGGGTTTGTTGTCATGCTGCTGGAACTGTAGTAAAAACTTCTCATCTTCATGGTTGTTTTCCTGA 1575 0.447 MLYLICVTFIENSQPFITYPFEFTHTTKHTTIAMSSISTLRSRSSPFIAQRLSIQRFQIRHSSTSSPASSLLNSSDPVRTGFGLRCISTVLAGTSLGFLLYGFCSSSPNSEFDSALLKSSISSLVDWSTPTLEDPNRRRSFFPKFSFPEINGGSLVGDAFRRKIFFNYEKRIRLRSPPEKVFEYFASDRSPEGEVLMKPADLMRAVVPVFPPSESHLVRDGYLEGERRPGHLRCPPSEFFMLFDVNNDGLISFKEYIFFVTLLSIPESSFSVTFKMFDVDNNGEINKEEFKKVMALMRSRHRQGVHHRDGLRTGLKVNDSVEDGGLVEFFFDKDGNGRLQHDKFVKFLRDLHDEILRLEFAHYDYKSRQTISAKDFALSMVASADMSNLGRLLGRVDGLDDDPRFKDSRITFEDFKNFAELRKKLLPFSLALFSFGEVNGLLTRDDFQRAASHVCGISLSDNVVDIVFHLFDTNRDGNLSFDEFVRVLHKRERDIAQPVETGIMGLLSCCWNCSKNFSSSWLFS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00499 524 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 34 523 IPR039800 GO:0005509|GO:0006851
Cca05g00499 524 Gene3D - 436 500 - -
Cca05g00499 524 ProSitePatterns EF-hand calcium-binding domain. 472 484 IPR018247 -
Cca05g00499 524 ProSiteProfiles EF-hand calcium-binding domain profile. 331 354 IPR002048 GO:0005509
Cca05g00499 524 SMART efh_1 235 263 IPR002048 GO:0005509
Cca05g00499 524 SMART efh_1 463 491 IPR002048 GO:0005509
Cca05g00499 524 SMART efh_1 325 351 IPR002048 GO:0005509
Cca05g00499 524 SMART efh_1 269 297 IPR002048 GO:0005509
Cca05g00499 524 Pfam EF hand 239 256 IPR002048 GO:0005509
Cca05g00499 524 ProSiteProfiles EF-hand calcium-binding domain profile. 265 300 IPR002048 GO:0005509
Cca05g00499 524 CDD EFh 238 295 IPR002048 GO:0005509
Cca05g00499 524 Gene3D - 155 304 - -
Cca05g00499 524 SUPERFAMILY EF-hand 238 490 IPR011992 -
Cca05g00499 524 PANTHER CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL 34 523 - -
Cca05g00499 524 Pfam EF-hand domain pair 440 489 IPR002048 GO:0005509
Cca05g00499 524 ProSitePatterns EF-hand calcium-binding domain. 278 290 IPR018247 -
Cca05g00499 524 CDD EFh_MICU 270 491 - -
Cca05g00499 524 Gene3D - 305 427 - -
Cca05g00499 524 ProSiteProfiles EF-hand calcium-binding domain profile. 459 494 IPR002048 GO:0005509
Cca05g00499 524 Pfam EF hand 273 296 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00499 Cca-Chr5 11067532 11073712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00499 34 456 EF-hand Containing Proteins AT4G32060 61.556 5.70e-174 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00499 K22827 - gmx:100806575 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00499 05 11067532 11073712 Cca03g01597 03 34775579 34778820 PCT