Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01597 ATGCCTTCCTTTTCCACTCTTCGGAGATTATCACTCTTCGCCCAACGCTTCCGTACCCTTCACTCTTCCCCCTCACATCGCAATCCCAAGTGGGGTTCAGCCATTGTTGCAGCCTCTGCTGCTGCTCTTGCCCTTTTCTATTGCGTTAACACACCCCATTCAAGCTTCTACTCTGCTTTCTCAAACAACCACCCTCAAAGTTCTTCATTGTTTGAAAAATCATCCCTTCCCGAAAGTGATCATCGTGGCTTGCTTTTTGGAGATGCCTACAGAAGCAAGGTTTTCTTCAACTATGAGAAGCGCCTACGGTTGCATAGTCCACCCGAAAAGGTTTTTGAATACTTTGCATCTTGTCGTACTCCAGAAGGGGAGCTATTGATGAAGCCGGTGGACCTAATGCGAGCAGTTGTTCCTGTTTTCCCTCCATCAGAATCCAATCTTGTAAGAGAGGGATACTTGAAAGGTGAAAGAAGTCCTGGCCATTTATGCTGTCCCCCTTCGGATTTTTTTATGCTTTTTGATGTAAACAGCGACGGGCTTATATCTTTCAAAGAGTATATCTTTTTTGTAACTCTGCTTGGCATCCCAGAATCAAGCTTTTCTGCAGCATTTAAAATGTTTGACAAGGATGATGATGGGGAGATAGATAAGGAAGAATTCAAGAAAGTGATGCAATCAATGCGATCTCATACCAGACAAGGTGCTCACCATGGGGATGGACGACGAACTGGCCAAAATGCCAATGCTTCCGTAGAAAATGGAGGGATGGTGGAATACTTATTTGGTAAAGATGGAAAGGGACGCCTCAAACATGATAAATTCGTGCAGTTTATAAGAGACTTGCATGACGAAATTATGAGGCTGGAGTTTGCTCATTATGATTTCAAATCTCAGAAAACTATTTTGGCCAAGGACTTTGCACACTCCATAGTTGCTTCTGCTGACTTGAGTCATCTGGGCAGGTTGCTTGAACGGGTTGATGAATTAAGCAACGACCCACGGTTTAGGGATGTACGCATAACATTTGAAGAGTTCAAAAACTTTGCAGAGCTGCGGAAAAAACTGTTACCGTTTTCTTTGGCCCTTTTCAGTTTTGCAGAAGTACAAGGCCTGTTAGCAAGAGATGATTTTCAGCGTGCTGCATCCCATGTTTGTGGTTTAACCCTCTCAGAAAATGTGGTTGAGATTGTTTTCCACTTGTTTGACACGAATGGAGATGGAAACCTAAGCACAGAGGAGTTTGTTAAGGTGCTACAACATCGAGAAAGAGACATCGCTCAACCTGCGGAGACGGGAGTCATGGGTTTCTTGTCATGCTGCTGGAAATGTATGGGCACCTCCCCATCTTCTCGCTTCTTTTCCTGA 1365 0.4425 MPSFSTLRRLSLFAQRFRTLHSSPSHRNPKWGSAIVAASAAALALFYCVNTPHSSFYSAFSNNHPQSSSLFEKSSLPESDHRGLLFGDAYRSKVFFNYEKRLRLHSPPEKVFEYFASCRTPEGELLMKPVDLMRAVVPVFPPSESNLVREGYLKGERSPGHLCCPPSDFFMLFDVNSDGLISFKEYIFFVTLLGIPESSFSAAFKMFDKDDDGEIDKEEFKKVMQSMRSHTRQGAHHGDGRRTGQNANASVENGGMVEYLFGKDGKGRLKHDKFVQFIRDLHDEIMRLEFAHYDFKSQKTILAKDFAHSIVASADLSHLGRLLERVDELSNDPRFRDVRITFEEFKNFAELRKKLLPFSLALFSFAEVQGLLARDDFQRAASHVCGLTLSENVVEIVFHLFDTNGDGNLSTEEFVKVLQHRERDIAQPAETGVMGFLSCCWKCMGTSPSSRFFS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01597 454 Pfam EF-hand domain pair 373 421 IPR002048 GO:0005509
Cca03g01597 454 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 454 IPR039800 GO:0005509|GO:0006851
Cca03g01597 454 SMART efh_1 165 193 IPR002048 GO:0005509
Cca03g01597 454 SMART efh_1 199 227 IPR002048 GO:0005509
Cca03g01597 454 SMART efh_1 393 421 IPR002048 GO:0005509
Cca03g01597 454 Gene3D - 312 431 - -
Cca03g01597 454 SUPERFAMILY EF-hand 169 419 IPR011992 -
Cca03g01597 454 ProSiteProfiles EF-hand calcium-binding domain profile. 389 424 IPR002048 GO:0005509
Cca03g01597 454 Pfam EF-hand domain 202 225 IPR002048 GO:0005509
Cca03g01597 454 ProSitePatterns EF-hand calcium-binding domain. 402 414 IPR018247 -
Cca03g01597 454 ProSiteProfiles EF-hand calcium-binding domain profile. 195 230 IPR002048 GO:0005509
Cca03g01597 454 Pfam EF hand 168 186 IPR002048 GO:0005509
Cca03g01597 454 SUPERFAMILY EF-hand 260 424 IPR011992 -
Cca03g01597 454 CDD EFh 170 225 IPR002048 GO:0005509
Cca03g01597 454 CDD EFh_MICU 200 421 - -
Cca03g01597 454 PANTHER CALCIUM-BINDING EF HAND PROTEIN 1 454 - -
Cca03g01597 454 Gene3D - 107 280 - -
Cca03g01597 454 ProSitePatterns EF-hand calcium-binding domain. 208 220 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01597 Cca-Chr3 34775579 34778820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01597 69 386 EF-hand Containing Proteins AT4G32060 67.610 1.42e-151 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01597 K22827 - gmx:100786375 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00499 05 11067532 11073712 Cca03g01597 03 34775579 34778820 PCT