Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00481 ATGTTTTGTAAACTCGTTCCAGTTTCGCGCAAGAAAAAAACCGGTTTGAACCCGGTTTACCTTAACGTCTACGACCTGACCCCAATTAACGGTTACGCCTATTGGTTTGGCCTTGGAGTTTATCATTCTGGTGTTCAAGTTCATGGAGTTGAATATGGGTTTGGAGCTCATGAGCGTGACACGACCGGGATTTTTGAAGTGGAGCCTAGGAACTGTCCTGGATTCACCTTCAGGAAATCGATTTTCATTGGATCGACGGATATGGGACCGAACGAGGTTCGCATGTTTATGGAGAAGCTGGCTGAATTGTATTCTGGGAACACCTACCACCTTATCCAAAAAAATTGCAACCATTTCTGCAATGATGTTTGTCTCAAGTTAACGGGAAAGTCTATCCCAAGATGGGTGAATCGGCTTGCTAGAATTGGTTTTCTCTGCAATTGTGTTCTTCCGCCGAGCCTAAACGAAACAAAGGTTCGCCAAGTTACGTTAGAGAGGGCTCAAGAAGGAGAAAAGAAGAAAATGAGAAGCCAGTCGAGCAGGTACGAGGCTTCACCCAATCCTCAGTTGTCTATTAGCCAAAGACATTGCCTTCCTCCATCTTCTTCTGTAATTAACGCTTCTCCGTCCTCAACCTTAACAGTAAAGTAG 651 0.447 MFCKLVPVSRKKKTGLNPVYLNVYDLTPINGYAYWFGLGVYHSGVQVHGVEYGFGAHERDTTGIFEVEPRNCPGFTFRKSIFIGSTDMGPNEVRMFMEKLAELYSGNTYHLIQKNCNHFCNDVCLKLTGKSIPRWVNRLARIGFLCNCVLPPSLNETKVRQVTLERAQEGEKKKMRSQSSRYEASPNPQLSISQRHCLPPSSSVINASPSSTLTVK 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00481 216 Pfam PPPDE putative peptidase domain 18 151 IPR008580 GO:0008233
Cca05g00481 216 MobiDBLite consensus disorder prediction 165 179 - -
Cca05g00481 216 MobiDBLite consensus disorder prediction 165 216 - -
Cca05g00481 216 PANTHER THIOL PEPTIDASE FAMILY PROTEIN, PUTATIVE-RELATED 3 214 - -
Cca05g00481 216 PANTHER DESUMOYLATING ISOPEPTIDASE 3 214 IPR008580 GO:0008233
Cca05g00481 216 MobiDBLite consensus disorder prediction 180 216 - -
Cca05g00481 216 ProSiteProfiles PPPDE domain profile. 17 154 IPR008580 GO:0008233
Cca05g00481 216 Gene3D PPPDE domains 12 173 IPR042266 -
Cca05g00481 216 SMART DUF862_2a 17 155 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00481 Cca-Chr5 10647023 10650330 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00481 K22763 - gmx:100786432 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00481 05 10647023 10650330 Cca03g01615 03 35048516 35050571 PCT