Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01615 ATGCTGCGTAAGCTCGTATCAGGGCCACGCAAGCACAAACCTGGCACCGTCCCCGTTTACCTCAACGTCTATGATCTCACTCCAATTAATGGCTATGCCTATTGGCTTGGCCTTGGTGTCTACCATTCCGGAGTTCAAGTTCATGGTGTTGAATATGGTTTTGGTGCCCACGAGCACGACACGACGGGAATTTTTGAAGTGCAACCCAAACACTGCCCTGGCTTCACTTTCAGAAAGTCGATTTTCATTGGAACAACGGATCTGGGGCCCAAAGATGTTAGGGTGTTCATGGAGAAGCTCGCTCAAGAGTACTCTGGCAACACCTATCATCTCATCTCCAAAAATTGCAACCACTTCTGCAATCATGTTTGCCTCAAATTAACGGCAAACTCAATCCCTCGATGGGTCAACCGTCTTGCTCGACTTGGTCTTCTTTGCAACTGTGTTCTCCCCCCTGGACTAAATGACACAAAGGTTCCGCAAGTTACATCAGAGAGGGTTCAGGAAGGAGAAAAGAGGAAAGTGAGAAGTCAGTCCTGCAGGTACGAGGGTTCCTCCAATTCTTCATTGCCTAGAGGTTCGGCAATTAAAAGTAGTAGCCAAAGACATTGTCTTCCTCCATCTTCATCTTTGATTAATGCTTCTTCGGCCTCAACCTTAACAGTGAAGTAA 672 0.4702 MLRKLVSGPRKHKPGTVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHCPGFTFRKSIFIGTTDLGPKDVRVFMEKLAQEYSGNTYHLISKNCNHFCNHVCLKLTANSIPRWVNRLARLGLLCNCVLPPGLNDTKVPQVTSERVQEGEKRKVRSQSCRYEGSSNSSLPRGSAIKSSSQRHCLPPSSSLINASSASTLTVK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01615 223 Pfam PPPDE putative peptidase domain 18 150 IPR008580 GO:0008233
Cca03g01615 223 MobiDBLite consensus disorder prediction 165 179 - -
Cca03g01615 223 MobiDBLite consensus disorder prediction 180 223 - -
Cca03g01615 223 PANTHER THIOL PEPTIDASE FAMILY PROTEIN, PUTATIVE-RELATED 2 221 - -
Cca03g01615 223 SMART DUF862_2a 17 155 IPR008580 GO:0008233
Cca03g01615 223 ProSiteProfiles PPPDE domain profile. 17 154 IPR008580 GO:0008233
Cca03g01615 223 Gene3D PPPDE domains 13 171 IPR042266 -
Cca03g01615 223 PANTHER DESUMOYLATING ISOPEPTIDASE 2 221 IPR008580 GO:0008233
Cca03g01615 223 MobiDBLite consensus disorder prediction 162 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01615 Cca-Chr3 35048516 35050571 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01615 K22763 - gmx:100306675 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00481 05 10647023 10650330 Cca03g01615 03 35048516 35050571 PCT