Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01057 ATGAAAAGTATTCCCCAAAATGAGGAGCAAAGCATAGAGGAGAGCCATAGGAATGCAGGAAGCAGCTTTCATCAAGGACAGGGCCATTTCCATTTTATGCAGAATAAATCACATCAAGGGGACAGCACAGGAAGCACTTTCATACAACAGAACACAACACACCAACCTTTCTACTTTCTCCCAACCTTAAAGTGCTGTCTCACTCTCTCTTCCCTTCTTTCTCATGTCAAACCCTCTTCCCTTGTCTTCCAACTTCCAATAATTAAGGAAAACAAAAGCACCTCATTGACCGGAGAATCTCTAGGACCAAAGAGCCAGAGCACAGAAGGGGTGAAAAATTGGCCAAGCAAACGGGTTGGAGTGCATTCTGTTGGTGATCATACAGCCATTGAGCTAATTGGAAGAGATCGCCCAGGCCTTTTGTCTGAGATTTCAGCTGTTCTTGCCAACCTCCATTTTAATGTTGTTGCAGCAGAAGTTTGGACTCATAACAGTCGAATCGCTTGCATCCTTTATGTCAATGATGCTACAAACCAAGCTGTGGATTATCCAAACAGATTATCTCTTATGGAGGAGCAGCTCAACAACATCTTACGTGGATGTGATGGTGACAAAGTTGCTAGGACCAGTTTCTCCATGGGTTTGACCCATATGGATCGGCGGCTTCACCAAATGTTATTTGCTGATCGGGATTATGAAAGTTCTGGAGTAACAACTGATGTTGATTGTCATCCCTCTTTAAGGCCAAAAATCACAATAGAACGTTGTGAGGAAAAAGGTTACTCAGTGGTGAGTGTAAGGTGCAAAGATCGGGCAAAACTCATGTTTGACATTGTTTGCACTCTTACTGATATGCAATATGTTGTTTTCCATGCCACAATCTCATCAGATGTCCCTTATGCATCCCAGGTATATTACATTGATATGCTTCTACTCTACATGTTAGTTTATGAATCATGTATAGGACTTATTCATTGA 978 0.4202 MKSIPQNEEQSIEESHRNAGSSFHQGQGHFHFMQNKSHQGDSTGSTFIQQNTTHQPFYFLPTLKCCLTLSSLLSHVKPSSLVFQLPIIKENKSTSLTGESLGPKSQSTEGVKNWPSKRVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLHFNVVAAEVWTHNSRIACILYVNDATNQAVDYPNRLSLMEEQLNNILRGCDGDKVARTSFSMGLTHMDRRLHQMLFADRDYESSGVTTDVDCHPSLRPKITIERCEEKGYSVVSVRCKDRAKLMFDIVCTLTDMQYVVFHATISSDVPYASQVYYIDMLLLYMLVYESCIGLIH 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01057 325 Pfam ACT domain 129 165 IPR002912 -
Cca03g01057 325 Gene3D - 123 202 - -
Cca03g01057 325 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 88 308 IPR040217 -
Cca03g01057 325 MobiDBLite consensus disorder prediction 1 27 - -
Cca03g01057 325 SUPERFAMILY ACT-like 124 199 IPR045865 -
Cca03g01057 325 ProSiteProfiles ACT domain profile. 129 211 IPR002912 -
Cca03g01057 325 PANTHER FOUR ACT DOMAIN ACT DOMAIN PROTEIN WHICH PROTEIN 88 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01057 Cca-Chr3 25689352 25716038 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01057 - - gmx:100789173 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01057 03 25689352 25716038 Cca03g01057 03 25689352 25716038 ECH
Cca05g00070 05 1508573 1514375 Cca03g01057 03 25689352 25716038 PCT