Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca03g01056 | ATGGTTGGCAAGGATAATAACCTGAGGGCTGAGGACTTGAACTTGTGCTTTGAGAAACTTATGATGGTGGCTGCGAGCGGGAACAGTGAGAAAGGGATGAACATGATGAAGCTTGGGGTGATCACCGAGTGGAAGGATATTCCTGTGGAGCTTTTGATGCAAATTTTGTCCCTTGTGGATGATCAGACCGTGATCACAGCTTCTGGAGTATGTCGTGGCTGGAGAGATGCTATTTACTTTGGCCTTGCTCGTTTATCACTCTCATGGTGTAGCAAGAACATGAATAACTTGGTGCTTTCTCTTGTGCCTAAATTCGCAAAACTGCAAATTCTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGATAATGCTGTTGAGATTATAGCAAAATGTTGTCATGAACTGCAGATCCTGGACCTTAGCAAAAGCTTCAAGCTAACTGATCGTTCACTCTATGCTGTTGCTCTAGGTTGCCGTGATCTTTCAAAACTCAACATCAGTGGGTGTTCAGCATTTAGTGACAATGCTCTGGCTTATCTTGCCAGTTTCTGCAGAAAACTGAAAGTTCTAAATCTCTGTGGATGTGTTAGAGCTGCATCTGATACTGCATTACAGGCTATTGGACAATACTGCAACCAGTTGCAATCTTTGAACCTTGGATGGTGTGATAACGTTGGTGATGTTGGAGTGACTACTTTAGCATACGGGTGTCCTGATCTTAGGACAGTTGACTTGTGTGGGTGTGTCCGTATTACAGATGATAGTGTGATTGCTTTGGCAAACAGATGCCCCCATCTGAGGTCCCTTGGACTGTACTACTGCAAGAACATCACAGACAGGGCAATGTATTCGTTGGCACACAGCAAGGTGAATAACAGGATGTGGGGATCTGTGAAAGGAGAAAATGATGAGGAAGGTTTAAGGACTTTGAACATAAGCCAATGCACTGCACTCACCCCATCTGCAGTTCAAGCGGTTTGTGACTCATTCCCTTCTCTTCACACATGCTCGGGGAGGCATTCACTCATCATGAGTGGCTGCCTCAATTTGACATCTGTGCATTGTGCATGTGCTGTCCATGCACACCGTGCATTCACCTCTTTCACTCATCCTGCTCACTAA | 1122 | 0.451 | MVGKDNNLRAEDLNLCFEKLMMVAASGNSEKGMNMMKLGVITEWKDIPVELLMQILSLVDDQTVITASGVCRGWRDAIYFGLARLSLSWCSKNMNNLVLSLVPKFAKLQILILRQDKPQLEDNAVEIIAKCCHELQILDLSKSFKLTDRSLYAVALGCRDLSKLNISGCSAFSDNALAYLASFCRKLKVLNLCGCVRAASDTALQAIGQYCNQLQSLNLGWCDNVGDVGVTTLAYGCPDLRTVDLCGCVRITDDSVIALANRCPHLRSLGLYYCKNITDRAMYSLAHSKVNNRMWGSVKGENDEEGLRTLNISQCTALTPSAVQAVCDSFPSLHTCSGRHSLIMSGCLNLTSVHCACAVHAHRAFTSFTHPAH | 373 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca03g01056 | 373 | SMART | LRR_CC_2 | 184 | 210 | IPR006553 | - | |
| Cca03g01056 | 373 | SMART | LRR_CC_2 | 237 | 262 | IPR006553 | - | |
| Cca03g01056 | 373 | SMART | LRR_CC_2 | 211 | 236 | IPR006553 | - | |
| Cca03g01056 | 373 | SMART | LRR_CC_2 | 304 | 329 | IPR006553 | - | |
| Cca03g01056 | 373 | SMART | LRR_CC_2 | 132 | 157 | IPR006553 | - | |
| Cca03g01056 | 373 | SMART | LRR_CC_2 | 158 | 183 | IPR006553 | - | |
| Cca03g01056 | 373 | SMART | LRR_CC_2 | 263 | 288 | IPR006553 | - | |
| Cca03g01056 | 373 | SMART | LRR_CC_2 | 105 | 131 | IPR006553 | - | |
| Cca03g01056 | 373 | Gene3D | Ribonuclease Inhibitor | 83 | 363 | IPR032675 | - | |
| Cca03g01056 | 373 | Pfam | F-box-like | 45 | 78 | IPR001810 | GO:0005515 | |
| Cca03g01056 | 373 | Pfam | Leucine Rich repeat | 263 | 286 | IPR001611 | GO:0005515 | |
| Cca03g01056 | 373 | Pfam | Leucine Rich repeat | 211 | 234 | IPR001611 | GO:0005515 | |
| Cca03g01056 | 373 | Pfam | Leucine Rich repeat | 237 | 260 | IPR001611 | GO:0005515 | |
| Cca03g01056 | 373 | PANTHER | UNCHARACTERIZED | 1 | 355 | - | - | |
| Cca03g01056 | 373 | Gene3D | - | 41 | 82 | - | - | |
| Cca03g01056 | 373 | PANTHER | F-BOX SKP2A-LIKE PROTEIN | 1 | 355 | - | - | |
| Cca03g01056 | 373 | SUPERFAMILY | RNI-like | 81 | 287 | - | - | |
| Cca03g01056 | 373 | SUPERFAMILY | F-box domain | 44 | 80 | IPR036047 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca03g01056 | Cca-Chr3 | 25647451 | 25650934 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca03g01056 | K03875 | - | gmx:100818928 | 704.516 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca03g01056 | 03 | 25647451 | 25650934 | Cca03g01056 | 03 | 25647451 | 25650934 | ECH | |
| Cca05g00069 | 05 | 1490646 | 1493780 | Cca03g01056 | 03 | 25647451 | 25650934 | PCT |