Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01042 ATGTTCCAGAGAAGAAAAAAGGAGCAGATTAGTAACAGTAGTAGCAGTGGCACCTTGGCTGTGGTAGCATCATCGACGAATTCTCCCATGAGAAACGCAACACCCTCATTCAAATCCTTCCTCTTAACGCTCTCGCTCATTCTCAACCTCTACCTCCTGTGGGCCCCACTCTCCCCAACGCTCCCCCAATCCACCCTCATCTCCCGCCTCTCCCCCACCGCGCGCCGCCACCTTCTCTTCTCCGTCGCCTCCTCCTCCCTCTCCTGGCCCCGCCGCCTCCCCTACCTCCGCCTCTGGCACTCCCCCGCCACCACCCGCCTCCTCGCCTTCCTCGACAAACCGCCGCCGTCCACCAACTCCTCCCACTCTCCCGAGGTCGTTATCTCCGCCGACACCGACGCCTTCCCGTACTCGTTCCGCGGGGGGCTGCGCTCGGCGATCCGCGTGGCGCGCGTGGTGAAGGAGGCCGTGGATCGCAACGAGACGGACGTGCGGTGGTTCGTGTTCGGCGACGACGACACCGTGTTCTTCGTCGACAACGTGGTGAGGACGCTCGCCAAGTACGACCACCGGAGGTGGTTGTACGTCGGGAGCAACTCCGAGAGCTACGACCAGAACGTGAAGTACTCGTTCGAGATGGCGTTTGGCGGTGGAGGCTTCGCGATTAGTTCCTCGCTCGCTAGGGTTTTGGCTAGGGTTTTGGATTCGTGTTTGAGGAGGTATGGACATTTGTACGGCAGCGATTCCAGGATTTATTCCTGCGTCGCGGAGCTTGGTGTTGGATTAACTCATGAACCTGGATTTCATCAGTTAGATATGCGGGGTAATTTGTTTGGGATGCTGACTGCACATCCATTATCTCCTTTGCTGTCCCTTCATCACTTGGATGCAGCGGAGCCCCTTTTTCCTGACATGAACAGAGTACAGGCTTTGGAACATCTTATTGCAGCTGCAAATATAGATCCTGCCAGGATTCTGCAGCAAACTGTCTGCTATGATCGATCAAATTCTTTGACTTTCTCGGTTTCTTGGGGTTTTGCTGTTCAGGTTTATCAAGGAAATGAACTTCTACCTGACCTCCTTTCGCTGCAGAAAACTTTTGTGCCATGGAGGAGGGGTAGTAAAGCTAATGCCAATTTTATGTTTAACACCAGAGACTACCCTAGAGATCCTTGTAAAAGGCCTCCTGTATTTTTCTTGAAAAATGTTACATCTGATAAAAGGGGCATTTGGAGCAATTACAGTAGGCATGTTGTTGGGAACTGCTTTGAATCATATGTTACACAGCTCAAGCGGATCATAGTTTTTTCAAGGAAGCTGGAGCTTAATAATGAACAGATGAATGCCCCCCGTCGTCAGTGCTGCAATGTGTTGCCATCTTCTAATGATACAACCAGTCTTCATATTAGACCGTGTGAAATCGGTGAACTGATCTCCATGCAATCATAA 1449 0.521 MFQRRKKEQISNSSSSGTLAVVASSTNSPMRNATPSFKSFLLTLSLILNLYLLWAPLSPTLPQSTLISRLSPTARRHLLFSVASSSLSWPRRLPYLRLWHSPATTRLLAFLDKPPPSTNSSHSPEVVISADTDAFPYSFRGGLRSAIRVARVVKEAVDRNETDVRWFVFGDDDTVFFVDNVVRTLAKYDHRRWLYVGSNSESYDQNVKYSFEMAFGGGGFAISSSLARVLARVLDSCLRRYGHLYGSDSRIYSCVAELGVGLTHEPGFHQLDMRGNLFGMLTAHPLSPLLSLHHLDAAEPLFPDMNRVQALEHLIAAANIDPARILQQTVCYDRSNSLTFSVSWGFAVQVYQGNELLPDLLSLQKTFVPWRRGSKANANFMFNTRDYPRDPCKRPPVFFLKNVTSDKRGIWSNYSRHVVGNCFESYVTQLKRIIVFSRKLELNNEQMNAPRRQCCNVLPSSNDTTSLHIRPCEIGELISMQS 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01042 482 Gene3D - 68 320 - -
Cca04g01042 482 Pfam Protein of unknown function, DUF604 205 455 IPR006740 -
Cca04g01042 482 PANTHER GLYCOSYLTRANSFERASE 31 480 - -
Cca04g01042 482 PANTHER FRINGE-RELATED 31 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01042 Cca-Chr4 11387241 11391243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01042 73 482 Glycosyltransferase AT4G15240 65.049 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01042 - - gmx:100813277 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01042 04 11387241 11391243 Cca04g01042 04 11387241 11391243 ECH
Cca04g01042 04 11387241 11391243 Cca10g00740 10 8383973 8385992 PCT