Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00998 ATGGCCAACCAAAACTCTCTCCCCCTCTATGAAAAATACTGGTACAAGCACAATTACAAAAGGGTAACAGATAGTTTGCTCTTAATCCTCCTCTTACTGCTGCTTGGTTATCGCGTTATCTCTTTTAACAGCTACTCTTTCCCTTGGTTTGTTGCCTTTTTGTGCGAATCATGGTTCACCTTCTCTTGGTTTTTAACCCTCACCACTCAGTGGAATCCAGCTCTAATCACAACCTACCCAGATCGTCTTTTGCTAAGCAGCGTGCAAGAGCTTCCAGCAGTGGATTTGTTCGTGACAACAGCAGATCCTGTGCTTGAACCACCGATTATCACAGTGAACACTGTATTGTCTCTGTTGGCACTTGATTACCCATCTCATAAGCTAGCTTGTTATGTTTCTGATGATGACTGTTCCCCTCTCACCTTCTATGCTCTTCAAGAAGCCTCCAAATTTGCTAAGTTTTGGGTACCTTTTTGTAAGAAGTATGAGGTGCAAATTAGAGCTCCACTTAGATACTTCTCTGGAAAGCCTGAGTTCTCCACAAACAACACCACACCAGAATTCAGACAAGAATGGTTACAGATGAAAGATCTGTATGATCATCTTAGCCACAAAATAGAATTAGATGAGTTACAAAAATCAGATCCATGTCATGGAGACTTTGCGGTTTTCTCAGATACTGAGAAAACAAATCATTCAACAATAATCGAGGTGATATGGGAGAACAGGGAATACCTTGTAGATGGATTGCCACATTTGATTTACATTTCTAGAGAAAAGAGGCCGAAACAGCCACACCATTTCAAAGCTGGTGCCATGAACGTGTTGACAAGAGTTTCCGGGTTGATAACCAACGCTCCCTTTATGTTGAACGTGGACTGTGACATGATTGTAAACAATCCAAAAATTATTCACCATGCATTGTGCATTTTGCTTGATCCCAAAGGAGAAAAAGAAGTTGCATTTGCTCAATTTCCCCAACAATTCTATGCTACATTGAAAGACGATCCTTTTGGAAATCAAATGGCAATTTTTATTAAGTACGTAACTGCTGGAATAGCTGGACTTCAAGGACCTTTCTACGGGGGAACAAACTGCTTACATAGAAGAAAAGTTATTTATGGTCTTTCTCCATGTGACATGGAAAAGGGAAACAGCATATCGGAGGAGGAATTAAAAGAAAAGTTTGGAGTTTCAAAGGAGATTATGAAATCAGCTGCTCGTGCTTTGGAAGGGAAGACTTATTTGCCAAATGATATTAATATTTCGAACGCTGTTGACATAGCAAGTCAAGTTGCTAGTTGTGGATATGAATATGGCACTGCCTGGGGCAAACAGGTGGGTTGGATATATGGATCAATAACAGAGGATAAGCTCCTTGGGCTGACAATACACGAAAAAGGTTGGAGATCAGAATTGTGTACACCAAGCCCAATTGGGTTCACAGGTTTCGCTCCAGGAGGTGGCCCAACTGCAATGATCCAACAAAAGAGATGGGCCACAGGATTGCTTGAAATCTTCTTTTGCAAGCATTCTCCTATTATTGGCACCCTTTTCCGTAAGCTTACTTTGAGACAGTGCTTAGCATATATGTGGATTATCAATTGGGGCCTACAGCCAGTATTTGAAGTATGTTATGCATGTCTCATTGCATATTGCATCGTCACCAACTCCAATTTCTTACCCTTGGACATGGGCATATGTATTCCTATTGCGATTTTCATAATTTACAAAGGATACACTATATTAGAGTATTTAGAATCAGATTTGTCAATTCGAGCATGGTGGAACAATCAAAGGATGTCAAGAATAATATCTATGAATGCTGGTTTTTGTGCATTTCTTAACATTCTACTTAAGTTATTAAGGATATCTGAAACTGTGTTTGACATAACAAAGAAAGATTTACCCCCAACAAAAGATGTTGAAGATGATAAAGATGTTGGTAAGTACACCTTCGACGAGTCCCTAATTTTCTTGCCAGGAACTACCATTTTGTTGTTGCAATTAACATCAATGATTATCAAGTTACTAGGATTGCAACCACTAGTGTCAACTCTAGGTGGAAATAGGTGTGGACTAGGTGAGgttttttgttgtgtatatttgataatttgttattggccatttttaAGAGGATTATTTGAGACAAAAAAGTATAGGATTTCCTTGTCTACTATATGCATATCAACTATCTTAACATGTCTCTTTGTGCATATATGTCAAAGGATCATGTTGGTTTAG 2244 0.3864 MANQNSLPLYEKYWYKHNYKRVTDSLLLILLLLLLGYRVISFNSYSFPWFVAFLCESWFTFSWFLTLTTQWNPALITTYPDRLLLSSVQELPAVDLFVTTADPVLEPPIITVNTVLSLLALDYPSHKLACYVSDDDCSPLTFYALQEASKFAKFWVPFCKKYEVQIRAPLRYFSGKPEFSTNNTTPEFRQEWLQMKDLYDHLSHKIELDELQKSDPCHGDFAVFSDTEKTNHSTIIEVIWENREYLVDGLPHLIYISREKRPKQPHHFKAGAMNVLTRVSGLITNAPFMLNVDCDMIVNNPKIIHHALCILLDPKGEKEVAFAQFPQQFYATLKDDPFGNQMAIFIKYVTAGIAGLQGPFYGGTNCLHRRKVIYGLSPCDMEKGNSISEEELKEKFGVSKEIMKSAARALEGKTYLPNDINISNAVDIASQVASCGYEYGTAWGKQVGWIYGSITEDKLLGLTIHEKGWRSELCTPSPIGFTGFAPGGGPTAMIQQKRWATGLLEIFFCKHSPIIGTLFRKLTLRQCLAYMWIINWGLQPVFEVCYACLIAYCIVTNSNFLPLDMGICIPIAIFIIYKGYTILEYLESDLSIRAWWNNQRMSRIISMNAGFCAFLNILLKLLRISETVFDITKKDLPPTKDVEDDKDVGKYTFDESLIFLPGTTILLLQLTSMIIKLLGLQPLVSTLGGNRCGLGEVFCCVYLIICYWPFLRGLFETKKYRISLSTICISTILTCLFVHICQRIMLV 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00998 747 SUPERFAMILY Nucleotide-diphospho-sugar transferases 108 577 IPR029044 -
Cca04g00998 747 PANTHER CELLULOSE SYNTHASE H1-LIKE PROTEIN 2 745 - -
Cca04g00998 747 Pfam Glycosyl transferase family group 2 447 548 IPR001173 -
Cca04g00998 747 Pfam Cellulose synthase 94 385 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cca04g00998 747 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 2 745 - -
Cca04g00998 747 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 216 390 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00998 Cca-Chr4 10846799 10860683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00998 1 738 Glycosyltransferase AT2G32530 44.386 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00998 - - gmx:100500469 1243.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00998 04 10846799 10860683 Cca04g00998 04 10846799 10860683 ECH
Cca10g00695 10 7768523 7772338 Cca04g00998 04 10846799 10860683 PCT