Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00980 ATGTCAGCACCTTCCATGACTTTGACCAACAAGGTTCAAAGCCTTGAGGAAAAGACCATGATGCCGAAGCAGGGCATCATCACCATTTTCGACTCAAACTCAAACACAACTTCTTCTACCTCTTCCTTGCGAAGAACTCTCTCTACAAACTTGTCCTCCAAGAATTGGCTCTCTCAGAACATTGCTCCATCTGAAGCTGAAGACAAAACCATTGCTGACTCCGAAGCTGAAGACACCTTTGCTGACTCCGAAGCTGAAAGAGATAGGCTCGAGATTTGGAGCTCCATCCAACGGAGCAAGAAGGAGGAGCAAGAGAAATCAAGACCATTTGATACGTGGAGCTCAATCATATCACTCAAAGGAAAAGATGAAATCTCCAAGTCACTTCCTGTGACACCTTATGTTCACCCTCTTGTGAAAAGGTCAAAGAGTTTAAGTGAGAAGAGCCTCCAAATCTGCACCGAGAGTCTCGGATCCGAGACAGGCTCCGATGGCTTGTTGTTCTCTTCTTACCCTTCTTCTGAGATAGGGGATGCAAGGGAAGAAGAGAAAATTGTTCCGGAACCAATTAATgaagaacaagaagaaggagaaaaagaagaGTTGTACAATTATGCTGCAGTGGCTACAAAGAAGGCTTCATCACCACCACGTGCTTTCCCTCCACCACTCCCTTCACTCTCTCATCATCACCAAGCTGATCCTTCACTTCACATGCGTTCCCACCGTGACAATGGAAGGTTGGTTCTAGAAGCTGTTTCTGTTCCTTCTCATAACAATTTCAACATTCAGCGCCAAGATGGTCGCCTTGTCCTCACTTTCTCCAATCACCAAGTGGAGGAGGAAGAAGAGAATGATGATCATGGGGAAGGGTGCCTAAGAGGGTTTGAATTTGAAGAAAATGAAGATTATGAGAGTGAAGAGGAATACTTTTTTGATACCAAGGCACAGGTATCCTCCACTGAAGGAAATTCTGGCTTGATGGAATATGAGAGTGCGATAGAGAAAGTGCCCTTATTGTCTGGTGGGTTGACAAGTAGTGTTCATGGGTTGGCTTTGATGATGAATAAGAATAAGACAATTGAGTTGGTGAATAGGAATCCAAAATGGTCGGAGAAATTCAATGAGATGAGCAATTTTGAGGATGTTAATATGGAACAATCACTGCCTTCAAGGCCAAGGGTAGCTAGGTTGATTCCATCAACACCTACTGTGCCTGGGGCTTCTTTCAATTTCAATGCTTATGAGTACTATTGGAGGACCAAGTCTACTACATCAAAAGGTACTAGTGTTAACCTTTACCCCCTTGACCAAGAGAAAAATCATCATCAAGAGAACCTGAAGAGCAAGGTTGTTGTCTCTGGGAACATGAACAAGGTGATCTCAAATGAGCAACAACAGTTGTTTGTTTTGAGAGGGAAGAATGGTGATTACTTGGTTCACAATTTGAAGAGTTGCAAGGATTCTAGAAGGTCATTTCTATTCTGGGAACCCTATTGCATTGCCACATCCTGA 1515 0.4284 MSAPSMTLTNKVQSLEEKTMMPKQGIITIFDSNSNTTSSTSSLRRTLSTNLSSKNWLSQNIAPSEAEDKTIADSEAEDTFADSEAERDRLEIWSSIQRSKKEEQEKSRPFDTWSSIISLKGKDEISKSLPVTPYVHPLVKRSKSLSEKSLQICTESLGSETGSDGLLFSSYPSSEIGDAREEEKIVPEPINEEQEEGEKEELYNYAAVATKKASSPPRAFPPPLPSLSHHHQADPSLHMRSHRDNGRLVLEAVSVPSHNNFNIQRQDGRLVLTFSNHQVEEEEENDDHGEGCLRGFEFEENEDYESEEEYFFDTKAQVSSTEGNSGLMEYESAIEKVPLLSGGLTSSVHGLALMMNKNKTIELVNRNPKWSEKFNEMSNFEDVNMEQSLPSRPRVARLIPSTPTVPGASFNFNAYEYYWRTKSTTSKGTSVNLYPLDQEKNHHQENLKSKVVVSGNMNKVISNEQQQLFVLRGKNGDYLVHNLKSCKDSRRSFLFWEPYCIATS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00980 504 PANTHER PROTEIN FAF-LIKE, CHLOROPLASTIC 18 503 - -
Cca04g00980 504 MobiDBLite consensus disorder prediction 63 86 - -
Cca04g00980 504 MobiDBLite consensus disorder prediction 68 86 - -
Cca04g00980 504 PANTHER FANTASTIC FOUR-LIKE PROTEIN (DUF3049) 18 503 IPR021410 -
Cca04g00980 504 MobiDBLite consensus disorder prediction 213 238 - -
Cca04g00980 504 Pfam Fantastic Four meristem regulator 219 274 IPR046431 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00980 Cca-Chr4 10587154 10588816 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00980 - - gmx:100787948 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00980 04 10587154 10588816 Cca04g00980 04 10587154 10588816 ECH
Cca10g00673 10 7457758 7458897 Cca04g00980 04 10587154 10588816 PCT