Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00946 ATGATGGCTCATACTACATCACCACCACCGGATAAAACCGAAACCTCGTCAAGCCTCGCCACGCTGCACCCCGACATCATCCACGCGCACATCCTCACGCGCCTCGACGGCGCCACGCTGGCCTCCGCTGCCTCCGTCTCATCCCTCATGCACCGCCTCTGCACCGAAGACGATCTCTGGCGCCACATATGCACCGCCACCTGGCCCTCCTTGCAAGACCCCTCCGCCCGCCACGTCATCTCCACCATCCCCGGCGGCTACCGTTCCATTTTCTCCGACGCCTTCCCTTCCCTCCACCACTTTTCTCTCCGCCCCCACCGCCCACCGCCGCCTCCGCCAGAGCTAATCTCCGCCGTGGATATATATTATCAGGGAAAACCTGTTTTCTCGCGCGTGAAACGCACCCAAACGCAGAAAAACTGGTTCCTCTCCTCGCCCCTCTGGCTAGACGCGCTCGAACCCAACGAGTTGATTCCGACGACGGTGAAGTTTGCGAGGAAGGACGAGGAGTGGCTGAGGCATTTCGAGGAGAACCTGAGCGTGAGCTGGATAGTGGTGGACCCGGCGCAGGGGCGGGCGGCGAACGTGTCGAGCCGTGGGGCGGTGGCAGCGCGGCGGCACTGGCTGACGCGGGACTTGGAGGTGGTGTACGCGGCGGAGATGGCGGGGGAGCGGCAGCATGCGATGGAGAGGGTGCAGTGTGTGGTGAAGGTCACGTGCTGCGGGAAGGTGGGCGGGGAGCTGCACGTGAGGGAGGTGAATTTGGTGATGGAGGACACGGAGGGGCGGCACGTGACTGGGAAGGAGGGTCTGGCCATTCTGCAGAGGGCCATGGAGTGCGGAGAAAGGAAGAGAATTGATCACGTGAGGGATAAGGAGAGGTTTGAGAATTTCACGTGCTTGATGAAGGAGAAAAGAGAGTGTAAACGTAAGAGGGAGAAGGCAAAGGATGTTGCTTCTACTTTGCTCGCTTTTCTTGCTCTTCTATTCTTTTGCTTCATCGCTGGATCAAAGACCTAG 1020 0.6 MMAHTTSPPPDKTETSSSLATLHPDIIHAHILTRLDGATLASAASVSSLMHRLCTEDDLWRHICTATWPSLQDPSARHVISTIPGGYRSIFSDAFPSLHHFSLRPHRPPPPPPELISAVDIYYQGKPVFSRVKRTQTQKNWFLSSPLWLDALEPNELIPTTVKFARKDEEWLRHFEENLSVSWIVVDPAQGRAANVSSRGAVAARRHWLTRDLEVVYAAEMAGERQHAMERVQCVVKVTCCGKVGGELHVREVNLVMEDTEGRHVTGKEGLAILQRAMECGERKRIDHVRDKERFENFTCLMKEKRECKRKREKAKDVASTLLAFLALLFFCFIAGSKT 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00946 339 Gene3D - 11 142 - -
Cca04g00946 339 SUPERFAMILY F-box domain 13 87 IPR036047 GO:0005515
Cca04g00946 339 PANTHER F-BOX PROTEIN-RELATED 15 333 IPR045283 -
Cca04g00946 339 PANTHER F-BOX PLANT-LIKE PROTEIN 15 333 - -
Cca04g00946 339 Pfam F-box-like 24 65 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00946 Cca-Chr4 10045839 10047509 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00946 - - ccaj:109798917 630.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00946 04 10045839 10047509 Cca04g00946 04 10045839 10047509 ECH
Cca10g00646 10 7064041 7065479 Cca04g00946 04 10045839 10047509 PCT