Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00905 ATGGAGTTAGGAAGTATACTCCACTTCCTTCAGGACAAGACCATTTTAGTCACTGGTGCCACTGGCTTTCTCGCCAAAGTTTTATTGGAGAAGATATTGAGGGTCCAACCAAATGTTAAGCAGCTTTACCTCCTTTTAAGAGCTGCAGATGCCAAATCTGCCACTCATCGGTTGAACAATGAGATCATAGGGAAGGATTTGTTTAGATTGCTGAAGGAAAAGTTGGGTGCAAATTTTAATTCCTTTGTCTCGACAAAGTTGACTCTAGTACCTGGGGACATTTCTCGTGAAGATTTGGGATTGGAAGATTCCATTCTAAGGGAACAGATTTACGATCAAACTGATGTCATAATTAATTTAGCTGCAACAACCAACTTTGATGAAAGGTATGATATATCTTTGGGCCTAAATACTTTTGGTGTTAAGTATGTCATCAACTTCGCCAAAAAGTGTACCAAACTCGAGGTTCTTGTGCACGTATCAACAGCCTATGTATGTGGTGAGGGAGAAAGAGAAGAACTCATATTAGAGAAACCCTATCACTTGGGCGATTCATTGAATGGGGTGTGTGGATTAGACATCTATGAAGAAGAAAAAGTTGTACGTGACAAATTGAGTGAGCTACGACAGTTGGGAGCCTCAGAAAGTGAAATTAAAGAGGTTATGAAGGACTTGGGTATTAGCAGGGCAAAGTTGTATGGATGGCCAAACACATATGTATTCACAAAGGCGATGGGAGAGATGCTTGTTGAGCAACTAAAAGGAAACTTGTCCGTTGTGATCATTCGTCCTACCATTGTTACCAGTACATTCAAAGAACCTTTCCCTGGTTGGGCTGAAGGAGTAAGAACCATTGACAGTTTAGCTGTAGCTTATGGCAAAGGAAAATTAACATGCTTCCTTGGAGATCTCAAAGCAATTGTTGATGTGATACCAGCTGACATGGTGGTGAATGCAATACTTGTGGCCACGGTGGCTCATGCAAAGCATCCTAGTGATGATGTTATATATCATGTCGGTTCATCTGTTAGAAGACCAGTAAGATACAGCAATCTTCAAGACTATGGCTTAAGATATTTCACAGCAAAACCATGGATAAACAAGGATGGAAGGCCAGTTAAGGTTGGCAAAGTTACAGTATTGAGCGACATGGATAGCTTCAGAAGATACATGTTCATTCGCTACCTGCTTATGCTAAAGGGACTTGAGCTGGTCAATACTGCATTTTGCCAGTATTTCCAAGGAACATATCTTGATCTCAATAGGAAGATCCAGATTGTGATGCGATTGGTGGACCTTTACAAGCCTTACTTGTTCTTCAAATCTGCATTTGATGATTTGAACACAGAGAAGTTGCGAATGGCAGCAAGACAAGGTAGGGTGGAGACAGATGCGTTTTACTTTGACCCCCAACTGATTGATTGGGATGATTACTTTTTGAACATCCACCTCCCTGGCGTGGTCAAGTACATTTTCAAGTGA 1482 0.4116 MELGSILHFLQDKTILVTGATGFLAKVLLEKILRVQPNVKQLYLLLRAADAKSATHRLNNEIIGKDLFRLLKEKLGANFNSFVSTKLTLVPGDISREDLGLEDSILREQIYDQTDVIINLAATTNFDERYDISLGLNTFGVKYVINFAKKCTKLEVLVHVSTAYVCGEGEREELILEKPYHLGDSLNGVCGLDIYEEEKVVRDKLSELRQLGASESEIKEVMKDLGISRAKLYGWPNTYVFTKAMGEMLVEQLKGNLSVVIIRPTIVTSTFKEPFPGWAEGVRTIDSLAVAYGKGKLTCFLGDLKAIVDVIPADMVVNAILVATVAHAKHPSDDVIYHVGSSVRRPVRYSNLQDYGLRYFTAKPWINKDGRPVKVGKVTVLSDMDSFRRYMFIRYLLMLKGLELVNTAFCQYFQGTYLDLNRKIQIVMRLVDLYKPYLFFKSAFDDLNTEKLRMAARQGRVETDAFYFDPQLIDWDDYFLNIHLPGVVKYIFK 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00905 493 Pfam Male sterility protein 17 320 IPR013120 -
Cca04g00905 493 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 339 IPR036291 -
Cca04g00905 493 Pfam Male sterility protein 395 493 IPR033640 -
Cca04g00905 493 CDD FAR-N_SDR_e 13 364 - -
Cca04g00905 493 PANTHER MALE STERILITY PROTEIN 2-RELATED 2 492 IPR026055 GO:0080019
Cca04g00905 493 Gene3D - 8 375 - -
Cca04g00905 493 PANTHER FATTY ACYL-COA REDUCTASE 2 492 - -
Cca04g00905 493 CDD FAR_C 393 492 IPR033640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00905 Cca-Chr4 9612603 9619806 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00905 113 492 Acyl Lipid Metabolism Gene Families AT4G33790 60.789 6.61e-177 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00905 K13356 - gmx:100798338 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00905 04 9612603 9619806 Cca04g00905 04 9612603 9619806 ECH
Cca10g00613 10 6686175 6686965 Cca04g00905 04 9612603 9619806 PCT