Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00886 ATGAGAGACATAGTCTCATGTTTGAGCGACAACGCAGTGAACGTGTCTCACTACTCTTCAACAATCTCATGCTCCACAATCTCACCCTCCATCCAAAACTCAACCTCcaccatctacaccctcaaacaaatcaccatcacagtcacaTGGTGTAACCAAGGCCTCACCATAACCTTCAACCACCAAGACCCTCCACACTTCAGACTCAACACCACCTCACGCTTCTTCCGAAAGAAAAAAGGCTCCAAAACCCTCCAACTACACTCCTCCAACCTAGAAATCCTATGGGACCTCTCAAACGCCAAGTACCAAACCGGTCCAGAACCGCTTCAAGCCTTTTACCTCGTCATCATCGTAGACTCCGAACTAGCCTTGGTTCTCGGTGACACCGCGCAGGAAACACTTTCCAAGAGGTTCGCTTTCAAAACCAACCCTCTTGCCAGAATGGTTTCCAAACGAGAGCATTGTTCCGGCAACACGCTTTACACCACCAAGGCTCGCTTTTGCGACACCGGCACGTGCCACGATGTTCTCATCAGGTGCAGCCTCGAGAAGGACAACGATGGAGGCTTCTTCAAGTCCCCGGTTTTGAGCGTCTGCATTGATAAGAAGACTGTGACACGTGTGAAGAGGCTGCAGTGGAACTTTCGGGGGAACCAGACCATTTTCGTTGATGGGTTATTGGTGGATTTGATGTGGGACGTTCATGATTGGTTCTTCAACAACCCTTGTGGTGGAGGGTATGCTGTGTTCATGTTCAGGACTAGGAGTGGCATGGATAGTAGGTTGTGGTTGGAGGATAAGGGTGTGCAGAAAGATAAAGAGAGAGTTGAATTCTCCTTGTTGATCTATGCCTGTAAGACTTCATAA 870 0.4667 MRDIVSCLSDNAVNVSHYSSTISCSTISPSIQNSTSTIYTLKQITITVTWCNQGLTITFNHQDPPHFRLNTTSRFFRKKKGSKTLQLHSSNLEILWDLSNAKYQTGPEPLQAFYLVIIVDSELALVLGDTAQETLSKRFAFKTNPLARMVSKREHCSGNTLYTTKARFCDTGTCHDVLIRCSLEKDNDGGFFKSPVLSVCIDKKTVTRVKRLQWNFRGNQTIFVDGLLVDLMWDVHDWFFNNPCGGGYAVFMFRTRSGMDSRLWLEDKGVQKDKERVEFSLLIYACKTS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00886 289 Pfam Plant protein of unknown function (DUF868) 31 287 IPR008586 -
Cca04g00886 289 PANTHER DUF868 FAMILY PROTEIN 1 288 - -
Cca04g00886 289 PANTHER EXPRESSED PROTEIN 1 288 IPR008586 -
Cca04g00886 289 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00886 Cca-Chr4 9357355 9358224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00886 1 287 EF-hand Containing Proteins AT3G04860 36.027 3.45e-55 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00886 - - gmx:100794621 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00886 04 9357355 9358224 Cca04g00886 04 9357355 9358224 ECH
Cca10g00597 10 6540494 6542039 Cca04g00886 04 9357355 9358224 PCT