LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca04g00792	ATGACCGACGAAGAAAGAGAGGGAGAGATTAGGGCTTCCCTCGAGGACGCTCCCTCCAGCCCCGGCAGCAGCGGCTACGCCGGCGAAGGAGGCAGCACCAGTGCCACCAGCGGTTCCCAATTTGAAATCCAGCACCAGGAAATCGAGGACGACACCAGAATTGAAATCGATAGAATCTCACTTTCCGATTCCCACACGTCCTGGATTCCCGGGAAGCGCCACCTCGATGAGGATGATGCTTCCATATCGTGGAGGAAAAGAAAGAAGCATTTCTTCGTTCTCAGTCATTCTGGCAAACCTATATACTCTAGGTATGGAGATGAACACAGGCTTGCAGGCTTTTCGGCAACTTTGCAAGCAATTATTTCCTTTGTTGAGAGCGGGGGTGACTCCATCAAATTGGTGAGGGCTGGAAGGCATCAGGTGGTTTTTCTTGTTAAAGGACCAATTTACTTAGTCTGCATCAGCTCCACAGAAGAACCTTATGAGTCATTAAGGGGGCAGTTGGAGCTAATTTATGGTCAGATGCTTGTCATACTAACAAGATCAATAAACAGATGTTTTGAGAAGAACCCAAAGTTTGATATGACACCCTTGCTTGGTGGAACAGAAACTGTCTTCTCTTCTCTAATCCACTCTTTCAGTTGGAACCCAGCTACATTTCTTCATGCCTATACTTGTCTCCCTCTTTCATATGCAACAAGGCAAGCTGCAGGAGCTATTTTGCAAGATGTTGCTGATTCAGGTGTTTTGTTTGCAATACTGATGTGCAGGCACAAGGTAATCAGTCTTGTTGGTGCTCAGAAAGCTTCCCTTCATCCTGATGATATGCTGCTTTTGGCCAACTTTGTCATGTCATCAGAATCCTTCAGGACATCAGAATCATTTTCTCCAATTTGCTTGCCAAGATATAATCCTTCAGCATTTTTGTATGCATATATCGATTATTTTGATGCTGACACATACTTGATGTTGCTAACCACTAGCTCGGATGCGTTTTATAATCTTAAGGATTGCAGGTTTCGTGTTGAAATGGTTCTTTTGAAGTCAAGTGTCCTTAGTGAAGTTCAGAGATCCTTGCTAAATGGGGGAATGCATGTTGAGGATCTGCCACCATTGCCTCATTCTGGATCATCTCATTTGGGCCAGCACATGCTACCTTCAGATTCTCCTGACAGATTTAAGGAAGCTAATTCTGGCATTGGGGGTCCTGCTGGGTTGTGGCATTTCATGTATCGCAGTATATATCTGGATCAATACGTGTCTTCAGAGTTTCCATCATCAATTAACACACCACAACAGCAGAAAAGACTGTATAGAGCTTACCAGAAACTTTTTGCATCCATGCATGATAAAGGAATTGGACCACACAAAACTCAATTTAGAAGAGATGAAAACTACGTTCTTCTCTGTTGGGTGACACAGGATTTTGAGCTCTATGCTGCCTTTGATCCCCTTGCAGACAAGGCCTCGGCTATAAAGACCTGCAACCATGTTTGTCAATGGATAAAAGATGTGGAAAATGAAATATTTTTGCTAGGAGCTAGCCCTTTTTCATGGTGA	1563	0.4402	MTDEEREGEIRASLEDAPSSPGSSGYAGEGGSTSATSGSQFEIQHQEIEDDTRIEIDRISLSDSHTSWIPGKRHLDEDDASISWRKRKKHFFVLSHSGKPIYSRYGDEHRLAGFSATLQAIISFVESGGDSIKLVRAGRHQVVFLVKGPIYLVCISSTEEPYESLRGQLELIYGQMLVILTRSINRCFEKNPKFDMTPLLGGTETVFSSLIHSFSWNPATFLHAYTCLPLSYATRQAAGAILQDVADSGVLFAILMCRHKVISLVGAQKASLHPDDMLLLANFVMSSESFRTSESFSPICLPRYNPSAFLYAYIDYFDADTYLMLLTTSSDAFYNLKDCRFRVEMVLLKSSVLSEVQRSLLNGGMHVEDLPPLPHSGSSHLGQHMLPSDSPDRFKEANSGIGGPAGLWHFMYRSIYLDQYVSSEFPSSINTPQQQKRLYRAYQKLFASMHDKGIGPHKTQFRRDENYVLLCWVTQDFELYAAFDPLADKASAIKTCNHVCQWIKDVENEIFLLGASPFSW	520

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca04g00792	520	Pfam	Third Longin domain of FUZ, MON1 and HPS1	406	507	IPR043970	GO:0016192
	Cca04g00792	520	MobiDBLite	consensus disorder prediction	17	42	-	-
	Cca04g00792	520	MobiDBLite	consensus disorder prediction	1	42	-	-
	Cca04g00792	520	Pfam	First Longin domain of FUZ, MON1 and HPS1	89	210	IPR043972	GO:0016192
	Cca04g00792	520	Pfam	Second Longin domain of FUZ, MON1 and HPS1	250	340	IPR043971	GO:0016192
	Cca04g00792	520	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	89	106	IPR004353	GO:0006623
	Cca04g00792	520	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	107	127	IPR004353	GO:0006623
	Cca04g00792	520	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	141	155	IPR004353	GO:0006623
	Cca04g00792	520	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	192	204	IPR004353	GO:0006623
	Cca04g00792	520	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	221	242	IPR004353	GO:0006623
	Cca04g00792	520	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	245	258	IPR004353	GO:0006623
	Cca04g00792	520	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	269	285	IPR004353	GO:0006623
	Cca04g00792	520	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	294	317	IPR004353	GO:0006623
	Cca04g00792	520	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	322	348	IPR004353	GO:0006623
	Cca04g00792	520	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	469	483	IPR004353	GO:0006623
	Cca04g00792	520	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	485	498	IPR004353	GO:0006623
	Cca04g00792	520	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	498	518	IPR004353	GO:0006623
	Cca04g00792	520	PANTHER	BNAC04G15860D PROTEIN	4	520	-	-
	Cca04g00792	520	PANTHER	SAND PROTEIN-RELATED	4	520	IPR004353	GO:0006623

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca04g00792	Cca-Chr4	7866362	7873532	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca04g00792	K20195		-	gmx:100816794	842.032

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca04g00792	04	7866362	7873532	Cca04g00792	04	7866362	7873532	ECH
	Cca10g00519	10	5465965	5471597	Cca04g00792	04	7866362	7873532	PCT