Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00710 ATGGAATTCCCCACTTCCACTCTTAAACCATTTTTCTTAATTTTGTTACTACTCACATCAAGCCATGCAGGAGCAGGAGCAGGAGCACCACCCCCCTCATCAAACCTATTCCGAGAATACATCGGAGCGGAATTCAACAACGTTAAATTCTCCGATGTCCCAATCAACCCAAGTGTGGAATTCCACTTCATTCTCTCCTTCGCCATCGACTACGACACCTCATCATCGCCCTCACCCACCAACGGAAAATTCAACGTCTTTTGGGACACCACCAACCTTAGCCCCACCCAAGTTTCCTCCATCAAAGCCAAAAACCCAAATGTCAAAGTTGCCCTTAGTCTCGGGGGTGACAGCGTGGCAAACGGGTATGCTTTCTTCGACCCCTCTTCAACCGACACGTGGCTTTCCAACGCCGTTTCTTCCCTCACAACCATAATCAAAGACTACAACTTGGACGGAATCGACATTGACTACGAGCACTTCAAGTCAGACCCTGACACGTTTTCTGAGTGCATTGGGAGGCTCATCAAGACGCTCAAATCAAACGGGGTTATTTCTTTTGCTTCCATTGCTCCCTTCGATGATGACCAAGTTCAGAGCCACTACTTGGCCTTGTGGAAGAGTTACGGGGACATCATAGATTATGTTAACTTTCAGTTTTATGCCTACGACAAGGGCACCAGCGTCGACCAGTTCATCGGTTACTTCAACCAACAAAGTTCGAATTATAAAGGTGGGAAGGTGTTGGTGAGTTTCATCAGTGATGGGAGTGGTGGCTTGTCTCCAAATGCTGGCTTCTTCACTGCGTGTCATACGTTGAAGACTCACCAAAAACTTCATGGGATATTTGTTTGGTCCGCGGATGATTCCATGGGAAATGGTTTTCGCTATGAGAAGCAATCACAAGCTCTTTTAGCTTTACCCTAG 927 0.4693 MEFPTSTLKPFFLILLLLTSSHAGAGAGAPPPSSNLFREYIGAEFNNVKFSDVPINPSVEFHFILSFAIDYDTSSSPSPTNGKFNVFWDTTNLSPTQVSSIKAKNPNVKVALSLGGDSVANGYAFFDPSSTDTWLSNAVSSLTTIIKDYNLDGIDIDYEHFKSDPDTFSECIGRLIKTLKSNGVISFASIAPFDDDQVQSHYLALWKSYGDIIDYVNFQFYAYDKGTSVDQFIGYFNQQSSNYKGGKVLVSFISDGSGGLSPNAGFFTACHTLKTHQKLHGIFVWSADDSMGNGFRYEKQSQALLALP 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00710 308 PANTHER CHITINASE 2-LIKE 24 306 - -
Cca04g00710 308 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 35 302 IPR001223 GO:0005975
Cca04g00710 308 Pfam Glycosyl hydrolases family 18 62 225 IPR001223 GO:0005975
Cca04g00710 308 SUPERFAMILY (Trans)glycosidases 34 300 IPR017853 -
Cca04g00710 308 PANTHER 2, PUTATIVE, EXPRESSED-RELATED 24 306 - -
Cca04g00710 308 Gene3D Glycosidases 33 307 - -
Cca04g00710 308 CDD GH18_narbonin 36 290 - -
Cca04g00710 308 PRINTS 2-S globulin family signature 34 47 IPR000677 -
Cca04g00710 308 PRINTS 2-S globulin family signature 81 96 IPR000677 -
Cca04g00710 308 PRINTS 2-S globulin family signature 98 116 IPR000677 -
Cca04g00710 308 PRINTS 2-S globulin family signature 268 287 IPR000677 -
Cca04g00710 308 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 151 159 IPR001579 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00710 Cca-Chr4 7021864 7022968 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00710 - - gmx:100810745 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00710 04 7021864 7022968 Cca04g00710 04 7021864 7022968 ECH
Cca10g00469 10 4819916 4821125 Cca04g00710 04 7021864 7022968 PCT