Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00708 ATGGTTTCACTTCGAAAACCAGCTTGTCCTGAGTTAGATGCGTGTTGGACATGCTTTTCGTTTTCTCCTCTCATCACTTGCATTGATTTCCTCTCAATACAACAAAAGCCAAAAGGGTATTCAGATTTGTGTTCTGCTATTTGGTGGTGGCTTGCTGTGAGAGCTCTGAAGTACTTTTCATCTGATAAAATCACAAGGCTGGAGGGAGAAAATTCGGGAGAAAAGGGAAAAAGGTACAATTTGAGTGCTGCAAAATTTGCTGTTACCACCCAGAACTATGTTCTTCTCAGTGACTTTAGTGTGCAGAAAAATCCTGTTATGAAGGAGTACTCTCTAAATGTGACCTCAGACACCCTTGTGATCACCTTTGCCCCTTCAGACAATTCCATTGCTTTTGTGAATGCCATTGAAGTTGTTTCAGTTCCTGATGATCTCATTATTGATGATGGTTACACCCTGAATCCAGCAGGAACATACTCTGGCTTGTGGACACAGGCATTGGAGACAGTTTTCAGGGTTAACATGGGTGGTCCAACTGTCTCCTCTGCCAGCGACACGCTTCAACGAACTTGGGTTACTGATAAGGAATTCCTTATACAAGCTAACTTGGCCAGTAATTTTTCAAACATAGGTGCTGTTAAGTATGTAAATGGAGGGCCAACAGAAAATTCTGCTCCACCTTCTGTCTATGGGACTCTAACACAGATGAACTCAGCCGGTGATCCACGAAGCAATTTCAATGTGACTTGGCAGTTTGTTGTGGAGCCTCATTTTCAGTACCTTATTCGACTTCACTTCTGTGACATAATCAGCAAACGCCTCAATGAACTCTACTTCAATGTTTACATTAACTCCTGGTGGGCTGCTAAGGATCTTGATCTCAGTACAATAAATAATAATGTTTTGGCTGCTCCATTTTTTAAGGATTTGATTACAGCCCCATTGGCCAGCAACAAAGTTTTTGTAAGCATTGGCCCTTCTGATCTGAGTAGTGATTATCCTAATGCTATTTTGAATGGGCTGGAGATCATGAAAATGAATAACTCTGAGAGAAGTCTCAGCTCATCAACAGCTGTGCCTCTGACTAGTACTTCTGGTTCAAGTCATAAGAAAGTTGGCATCATAGTGGGTGTGAGTCTCGGGGCATTGCTTGTAGTGGTCTTGGTTGGAGTTTTCTTTTTTCTACGCAGGAAAAGAAGACTTTTGGAGAAACAAGGGCATTCAAAGACATGGATTCCCATATCTATCAATGACGGAACTTCTCACACAATGGGAAGTAAGTATTCTAATGCCACAACAGCAAGTGCTGCTTCAAACTTTGGaccttctatggGAGATGTCTTGTGGAATTTGGAATATGCTCTCCAGCTTCAAGAGGCTGTTGTTCAAGGTGATCCTGAAGAAAATAGTACCAATATGATTGGTGAACTCTCTCCACAGGTCAACAATTTCAGTCACGAAGAAGTAAGTGTTTCTGCTACACAATTTGAAGCTTCAAGTCTGGATGATCTGTCTGGTGTTTCTATGAGTAGGGTATTCTCACAGCTGGTGAAGTCTGAAGGGAGGTGA 1569 0.4168 MVSLRKPACPELDACWTCFSFSPLITCIDFLSIQQKPKGYSDLCSAIWWWLAVRALKYFSSDKITRLEGENSGEKGKRYNLSAAKFAVTTQNYVLLSDFSVQKNPVMKEYSLNVTSDTLVITFAPSDNSIAFVNAIEVVSVPDDLIIDDGYTLNPAGTYSGLWTQALETVFRVNMGGPTVSSASDTLQRTWVTDKEFLIQANLASNFSNIGAVKYVNGGPTENSAPPSVYGTLTQMNSAGDPRSNFNVTWQFVVEPHFQYLIRLHFCDIISKRLNELYFNVYINSWWAAKDLDLSTINNNVLAAPFFKDLITAPLASNKVFVSIGPSDLSSDYPNAILNGLEIMKMNNSERSLSSSTAVPLTSTSGSSHKKVGIIVGVSLGALLVVVLVGVFFFLRRKRRLLEKQGHSKTWIPISINDGTSHTMGSKYSNATTASAASNFGPSMGDVLWNLEYALQLQEAVVQGDPEENSTNMIGELSPQVNNFSHEEVSVSATQFEASSLDDLSGVSMSRVFSQLVKSEGR 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00708 522 PANTHER OS07G0166700 PROTEIN 41 418 IPR045272 GO:0004714|GO:0006468
Cca04g00708 522 PANTHER OS07G0166700 PROTEIN 442 493 IPR045272 GO:0004714|GO:0006468
Cca04g00708 522 PANTHER RECEPTOR-LIKE PROTEIN KINASE HERK 1 41 418 - -
Cca04g00708 522 PANTHER RECEPTOR-LIKE PROTEIN KINASE HERK 1 442 493 - -
Cca04g00708 522 Pfam Malectin-like domain 98 346 IPR024788 -
Cca04g00708 522 Gene3D - 165 348 - -
Cca04g00708 522 Gene3D - 67 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00708 Cca-Chr4 6978732 6981807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00708 442 522 Receptor kinase-like Gene Family AT3G46290 76.471 1.30e-33 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00708 - - gmx:100806488 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00708 04 6978732 6981807 Cca04g00708 04 6978732 6981807 ECH
Cca10g00464 10 4771137 4773656 Cca04g00708 04 6978732 6981807 ECH
Cca10g00464 10 4771137 4773656 Cca04g00708 04 6978732 6981807 PCT