Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00606 ATGATAGAGAGAAATATGGCTGAACTCGAACGCCCTCAGAGACAGATTGATGCTTCATCCAAAACTCCGGCTACAATCCATACCATGGAACAACTCCTCCGAGCAGGAGAAGCTTCCAAGTCTAAGCAGTCACCAACCTTTTCCACGTGCTCGTCTACCTCGTCCACCCACTCTTCTTCCCCCTCGTCCCCATTCTTCCAAAGGTTGAGGCACCATGACTCAGAAGAAGATCATGGCCAGAGTCAGAAGAAATCAGTTCTCACCAAAGTCAAGGAGAAGGCCAAGAAGTTACGCCACAGCCTCAGCAAGAAGAAACACGAGGACGGCAACGTCAGTAGTCCCTCATCAGCTACTGGTTTAGAAGCTGATGGAGCAGAGGACGAAGCTGAATACCAAGGACCTCCTGTTTACGAATCGGAGAAGACTCCTGTAAAAGGAAATGCAAGGCAGCATCCAAGTCCAAGAGCAAATCCAGTAACCCCTGAGAGGCATTTTATATCTACCAGTGACAAACACATGGTGGAACAAGATCTAGAAAAGACACTAAACCGTTCCATATCTAAGAAaaaaacaacaacacaacctgcaacatcaacaacaacaacaacacaacctgcaaaaacaacaatcaaTCCAAATGCTACTACCACCAATTCTGTTACTGTtactaatactaatactaatactaataataataccaataAAAATGCTAATGCTGATACTCTTTCTGGTCCAACCATCACAACGACTGAAACCGTGTCACGGAAACTGGCACCTGTTCATATTGAAGCACCAGATGAAGCTCAATCTATAACCACCAAAGTTCAAAACCTTGCTGAATCCAATTCCAAACCTACAGAGcatcatcgtgatcacactgcatcatcatcagcagcagcagcaGTTACACCTAAAGCAACTAATAACGCTTCTTTGTCATATGCTGCTCCACGTACAGCTCCTGCAAAGGCACTCTCGCGAGGTTCTTCAACCTCTCCGCGAAGTTTTGCACCATCACCTCCAGTGACTCCTATTGCGCATGTACCTGTAAAGGTACCCTCTCAAGTTTCTTCAAGCTCTCCGCGAACTTTTGCATCATCACCTTCAGTGACTCCTACAGCGCCTGCATCTGTTACTACTCCACCGAGTGGGAAGAACACAAGCCCCAGTGCACAAATATGGGATAAGGGTGTGTCGGTGAAAGAGTACTTGATGACCAAATTGGAGCCTGGGGAAGATGAGAAGGCACTGTCTCAGGTGATATCTGAAGCAATGAGTCCTAGAAGAACTCCTGGTGATGCAGGCGTCATGGAGAAGGTGAGAGAAGCTGTAACTTCTTTGCTCCGAACTGAGGGATCACCAAAATATACAGACACATctaatcctaatactcctactagtgctactactactcctCGCATGTCTTCTCAATTCCCAGCTTCTACCACTCCCAACACTTCTCCTCGCTCTCCATCTCAAATGCCAGCATCTACCAATGCTTCTCGTGCTGCATCTCAAATGCCAGCATCATCTACCAATGCTTCTCATGCCGCATCTCAGATGCCAGCATCATCTACCAGCGCTACTCGTGCTTCATCTCAGAGGCCAGCATCATCTACCAACGTTTATCGCACTTCATCTCAAATCCCAGTATCTACCAATGCTCAACCTGCAGACTATGAAGTGGCTCAGGAAGAAAACCATGGCCGAATTCTTCAGGCAAATTAA 1728 0.4225 MIERNMAELERPQRQIDASSKTPATIHTMEQLLRAGEASKSKQSPTFSTCSSTSSTHSSSPSSPFFQRLRHHDSEEDHGQSQKKSVLTKVKEKAKKLRHSLSKKKHEDGNVSSPSSATGLEADGAEDEAEYQGPPVYESEKTPVKGNARQHPSPRANPVTPERHFISTSDKHMVEQDLEKTLNRSISKKKTTTQPATSTTTTTQPAKTTINPNATTTNSVTVTNTNTNTNNNTNKNANADTLSGPTITTTETVSRKLAPVHIEAPDEAQSITTKVQNLAESNSKPTEHHRDHTASSSAAAAVTPKATNNASLSYAAPRTAPAKALSRGSSTSPRSFAPSPPVTPIAHVPVKVPSQVSSSSPRTFASSPSVTPTAPASVTTPPSGKNTSPSAQIWDKGVSVKEYLMTKLEPGEDEKALSQVISEAMSPRRTPGDAGVMEKVREAVTSLLRTEGSPKYTDTSNPNTPTSATTTPRMSSQFPASTTPNTSPRSPSQMPASTNASRAASQMPASSTNASHAASQMPASSTSATRASSQRPASSTNVYRTSSQIPVSTNAQPADYEVAQEENHGRILQAN 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00606 575 MobiDBLite consensus disorder prediction 187 246 - -
Cca04g00606 575 MobiDBLite consensus disorder prediction 1 15 - -
Cca04g00606 575 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 52 575 IPR037491 GO:0009737
Cca04g00606 575 MobiDBLite consensus disorder prediction 450 560 - -
Cca04g00606 575 Coils Coil 87 107 - -
Cca04g00606 575 MobiDBLite consensus disorder prediction 352 393 - -
Cca04g00606 575 MobiDBLite consensus disorder prediction 296 315 - -
Cca04g00606 575 MobiDBLite consensus disorder prediction 448 575 - -
Cca04g00606 575 PANTHER LOW-TEMPERATURE-INDUCED PROTEIN 52 575 - -
Cca04g00606 575 MobiDBLite consensus disorder prediction 37 67 - -
Cca04g00606 575 MobiDBLite consensus disorder prediction 182 246 - -
Cca04g00606 575 MobiDBLite consensus disorder prediction 68 88 - -
Cca04g00606 575 MobiDBLite consensus disorder prediction 276 393 - -
Cca04g00606 575 MobiDBLite consensus disorder prediction 1 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00606 Cca-Chr4 6027670 6029936 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00606 - - ccaj:109816311 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00389 10 4091252 4093409 Cca04g00606 04 6027670 6029936 PCT