Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00600 ATGACAGCTCTCGTCACTGGTGGAACTCGCAGAATAGGGCACGCCATTGTGGAGGAATTGACGGGGTTTGGAGCCAGAGTGCATACTTGTGCCAGGAACGAGCACGATCTCAATAAGTGCCTTGAGAAATGGAATGCTTCGGGTTTTGAGGTCACTGGCTCAGTTTGTGATGTCTCAGTTCCTCACCAGAGGGAGGTGCTTATGCAGTCTGTTTCCTCTCTCTTCCATGGGAAACTCAACATCCTTATAAACAATGTGGGGACAAACATTCGGAAACCAATGACAGACTTCACAAGTACAGAGTATTCCACTCTTATTGATACCAATCTGGGATCCGTCTTTCATATATGCCAACTTGCATATCCACTTTTGAAAGCATCGGGAATGGGAAGTGTTGTGTTTATCTCGTCTGTTTCTGGTTTTGTCTCACTGAAGTTGATGTCTGTTCAAGGAGCTACGAAAGGCGCAATAAATCAACTTACAAGAAATCTAGCTTGTGAGTGGGCAAAAGACAATATAAGGAGTAATGCGGTGGCACCTTGGTACATCAGAACTTCAATGGTAGAGCAGGTGCTCAGCAACAAAGACTATCTGGAAGAAGTGTACTCAAGAACTCCTCTTAGGCGCCTAGGAGATCCAGAAGAAGTCTCTTCTCTTGTTGCCTTTCTTTGCTTGCCAGCATCGTCATACATCACTGGCCAGATTATATGTATTGATGGAGGAATGTCCGTGAATGGTTTCTACCCAACAACACAGTTCTAA 762 0.4488 MTALVTGGTRRIGHAIVEELTGFGARVHTCARNEHDLNKCLEKWNASGFEVTGSVCDVSVPHQREVLMQSVSSLFHGKLNILINNVGTNIRKPMTDFTSTEYSTLIDTNLGSVFHICQLAYPLLKASGMGSVVFISSVSGFVSLKLMSVQGATKGAINQLTRNLACEWAKDNIRSNAVAPWYIRTSMVEQVLSNKDYLEEVYSRTPLRRLGDPEEVSSLVAFLCLPASSYITGQIICIDGGMSVNGFYPTTQF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00600 253 Pfam Enoyl-(Acyl carrier protein) reductase 11 243 - -
Cca04g00600 253 PANTHER TROPINONE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC 1 251 - -
Cca04g00600 253 Gene3D - 1 246 - -
Cca04g00600 253 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 IPR002347 -
Cca04g00600 253 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 IPR002347 -
Cca04g00600 253 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 IPR002347 -
Cca04g00600 253 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 245 IPR036291 -
Cca04g00600 253 PRINTS Glucose/ribitol dehydrogenase family signature 2 19 IPR002347 -
Cca04g00600 253 PRINTS Glucose/ribitol dehydrogenase family signature 77 88 IPR002347 -
Cca04g00600 253 PRINTS Glucose/ribitol dehydrogenase family signature 124 140 IPR002347 -
Cca04g00600 253 PRINTS Glucose/ribitol dehydrogenase family signature 150 169 IPR002347 -
Cca04g00600 253 PRINTS Glucose/ribitol dehydrogenase family signature 171 188 IPR002347 -
Cca04g00600 253 PRINTS Glucose/ribitol dehydrogenase family signature 206 226 IPR002347 -
Cca04g00600 253 PANTHER TROPINONE REDUCTASE 1 251 IPR045000 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00600 Cca-Chr4 5979340 5982811 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00600 1 247 Miscellaneous Gene Families AT2G29290 61.538 1.14e-113 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00600 K08081 - gmx:100799534 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00600 04 5979340 5982811 Cca04g00600 04 5979340 5982811 ECH
Cca07g01441 07 37721975 37766340 Cca04g00600 04 5979340 5982811 ECH