Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00373 ATGGCCTCTGCATCAGCATCTTTGCTCAAGTCTTCACTTGTTCTTGACAAGTCTGAGTGGGTGAAGGGACAAACCCTTCGCCAACCTTCTTCAGCAGTTGTAAGATGCAACTCCACCCCATCAGCCCTCACCGTCAGAGCTGGCTCCTATGCTGATGAGCTTGTTAAGACCGCGAAAACTGTGgcttcaccagggaggggtattttggccatggatgagtcaaatgctacctgtgggaagcgtttggcttcaattgggctagagaacactgaagctaaccgccaggcataccgtaccctccttgtgacagttcccggccttggtcagtacatctctggtgccattctctttgaggaaactctctaccaatccacaattgatggaaggaagatcgttgatgtgcttcttgagcaaaacattgttcctggtatcaaagTTGACAAGGGTTTGGTTCCCCTGGCTGGTTCCAATGACGAGTCATGGTGCCAAGGTTTGGATGGTCTTGCCTCACGCTCAGCTGCATACTACCAGCAGGGTGCCCGTTTCGCCAAATGGCGTACTGTTGTGAGCATCCCCAATGGTCCCTCTGCTCTAGCAGTTAAGGAAGCAGCCTGGGGTCTGGCTCGCTATGCTGCAATTGCTCAGGACAATGGGTTGGTCCCAATTGTGGAGCCAGAGATCTTGCTTGATGGGGAGCATGTTATTGATAGGACTTTTGAAGTAGCCCAAAAGGTGTGGGCAGAGGTTTTCTTCTACCTTGCTGAGAACAATGTCCTTTTTGAGGGTATTCTCCTTAAGCCTAGCATGGTTACACCTGGAGCTGAGTCCAAGGACAAGGCCAGTCCTCAGAAGGTTGCTGATTACACCCTCAAGCTCCTTCACAGGAGAATTCCTCCTGCTGTCCCTGGAATCATGTTTTTGTCTGGTGGACAATCTGAGGTTGAAGCAACCCTCAATTTGAATGCCATGAACCAATCTCCGAACCCATGGCACGTGTCGTTCTCATATGCCAGAGCACTCCAGAACACTGCCTTGAAGACATGGGGAGGCCGTCCAGAGAACGTGAAGGCGGCGCAAGATGCACTCCTTTTCCGTGCCAAGTCCAACTCCCTTGCTCAGCTTGGGAAGTACACTGGTGAGGGTGAGTCTGAGGAAGCCAAGAAGGAGTTGTTTGTCAAAGGATACTCCTATTAA 1194 0.4028 MASASASLLKSSLVLDKSEWVKGQTLRQPSSAVVRCNSTPSALTVRAGSYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTVPGLGQYISGAILFEETLYQSTIDGRKIVDVLLEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRSAAYYQQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAIAQDNGLVPIVEPEILLDGEHVIDRTFEVAQKVWAEVFFYLAENNVLFEGILLKPSMVTPGAESKDKASPQKVADYTLKLLHRRIPPAVPGIMFLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTALKTWGGRPENVKAAQDALLFRAKSNSLAQLGKYTGEGESEEAKKELFVKGYSY 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00373 397 CDD FBP_aldolase_I_a 51 377 - -
Cca04g00373 397 Gene3D Aldolase class I 32 396 IPR013785 -
Cca04g00373 397 SUPERFAMILY Aldolase 43 397 - -
Cca04g00373 397 ProSitePatterns Fructose-bisphosphate aldolase class-I active site. 258 268 IPR029768 -
Cca04g00373 397 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 25 397 - -
Cca04g00373 397 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 25 397 IPR000741 GO:0004332|GO:0006096
Cca04g00373 397 Pfam Fructose-bisphosphate aldolase class-I 53 397 IPR000741 GO:0004332|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00373 Cca-Chr4 3781375 3784634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00373 50 397 Miscellaneous Gene Families AT3G52930 55.966 6.00e-135 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00373 K01623 - gmx:100818383 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00373 04 3781375 3784634 Cca04g00373 04 3781375 3784634 ECH
Cca04g00373 04 3781375 3784634 Cca07g00090 07 1202524 1204869 ECH